Test install xz-utils

genome-nexus · Aug 22, 2024 · cd04649 · cd04649
1 parent de67726
commit cd04649
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/scripts/import_mongo.sh b/scripts/import_mongo.sh
@@ -59,8 +59,10 @@ curl https://genome-nexus-static-data.s3.amazonaws.com/mutationassessor4_for_gen
 echo "Download completed."
 
 echo "Extracting Mutation assessor data"
-apt-get update && apt-get install -y xz-utils
-unxz -k ${DIR}/../data/common_input/mutationassessor4_for_genome_nexus.tsv.xz
+apt update && apt install -y xz-utils
+echo xz-utils version
+xz --version
+xz -k ${DIR}/../data/common_input/mutationassessor4_for_genome_nexus.tsv.xz
 
 echo "Transforming Mutation assessor data"
 sed -i '' 's/uniprotId\tSV\thgvspShort\tF_score\tF_impact\tMSA\tMAV/uniprotId\tsv\thgvspShort\tf_score\tf_impact\tmsa\tmav/' ${DIR}/../data/common_input/mutationassessor4_for_genome_nexus.tsv