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38 Open 172 Closed
38 Open 172 Closed
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Issues list

Create subrun command to partially run jasen modules should
#355 opened Oct 3, 2024 by ryanjameskennedy
@ryanjameskennedy
Two unnecessary processes for spades module must
#354 opened Sep 20, 2024 by ryanjameskennedy
@ryanjameskennedy
TB workflow runs post_align_qc twice must
#353 opened Sep 20, 2024 by ryanjameskennedy TB
@ryanjameskennedy
Makefile species-specific installation should
#351 opened Sep 17, 2024 by ryanjameskennedy
@samuell @ryanjameskennedy
1
Mask out IS6110 from delly variants should
#349 opened Sep 16, 2024 by mhkc
Add resistance determining regions to tb expert rules bed file as IGV track must
#348 opened Sep 12, 2024 by ryanjameskennedy
@ryanjameskennedy
Download medaka models should
#341 opened Aug 22, 2024 by Emkago Nanopore
@Emkago
Add pHierCC module for Enterobase related actions should
#339 opened Aug 15, 2024 by ryanjameskennedy
@ryanjameskennedy
Poor performance of Serotypefinder using fastq files as input bug Something isn't working must
#329 opened Jul 10, 2024 by mhkc
Add profile for Borrelia
#328 opened Jun 26, 2024 by ryanjameskennedy
Additional requirements
#327 opened Jun 18, 2024 by hrydbeck
@mhkc
Makefile core usage argument could
#326 opened Jun 14, 2024 by sylvinite
Add profile for Pseudomonas aeruginosa
#306 opened May 21, 2024 by samuell
@samuell
Add profile for Acinetobacter baumannii
#305 opened May 21, 2024 by samuell
Add profile for Streptococcus pyogenes must
#304 opened May 21, 2024 by samuell
@ryanjameskennedy
4
Add profile for Enterococcus faecium
#303 opened May 21, 2024 by samuell
Add profile for Enterococcus faecalis
#302 opened May 21, 2024 by samuell
Check compatibility with Nanopore
#301 opened May 17, 2024 by Emkago
1
Add QC for Nanopore data
#299 opened May 17, 2024 by Emkago Nanopore
1
@Emkago
Add species Neisseria gonorrhoeae could
#291 opened Apr 25, 2024 by fwa93
4
Validate saureus pipeline using 100 validation samples must
#287 opened Apr 17, 2024 by ryanjameskennedy Saureus
@ryanjameskennedy
Add general gram negative workflow should
#286 opened Apr 11, 2024 by ryanjameskennedy General pipeline
@ryanjameskennedy
Add plasmid detection should
#281 opened Apr 4, 2024 by ryanjameskennedy General pipeline
@ryanjameskennedy
Add trim adapters optional module should
#280 opened Apr 4, 2024 by ryanjameskennedy General pipeline
@samuell @ryanjameskennedy
Prodigal training files are moved in Makefile but not in config files bug Something isn't working
#279 opened Mar 26, 2024 by samuell
1
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