Skip to content

genotechture/insilicogel

Repository files navigation

In-silico gel electrophoresis visualization

  • Take a dict of {samples : [DNA lengths list]}
  • Migrate according to a reference ladder's DNA size: vertical displacement proportion (1kb+ only)
  • assign samples to howevermany rows of length row_len
  • Visualize hypothetical plot
  • Could go downstream of PCR or restriction digestion simulation

example multiple rows

Requirements:

  • numpy
  • matplotlib

shortcomings:

  • band intensity is singular
  • unusable standalone without some sequence parsing know-how

About

in-silico gel electrophoresis visualization

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages