Add option to allow reference_tools to load some broken equation_coefficients files
#703
Workflow file for this run
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| name: continuous-integration | |
| on: pull_request | |
| concurrency: | |
| group: ${{ github.actor }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| OMPI_MCA_btl_base_warn_component_unused: 0 | |
| OMPI_MCA_mpi_yield_when_idle: 1 | |
| OMPI_MCA_rmaps_base_oversubscribe: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| # Fix OpenMPI issue in Docker : https://github.com/open-mpi/ompi/issues/4948 | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none | |
| jobs: | |
| test: | |
| name: linux-jammy-container-build | |
| strategy: | |
| matrix: | |
| include: | |
| - mpi: "" | |
| result-file: "changes-tests.diff" | |
| unit-result-file: "changes-unit-tests.diff" | |
| - mpi: "--mpi-f08" | |
| result-file: "changes-tests-f08.diff" | |
| unit-result-file: "changes-unit-tests-f08.diff" | |
| - mpi: "--mpi-f77 --FFLAGS=-fallow-argument-mismatch" | |
| result-file: "changes-tests-f77.diff" | |
| unit-result-file: "changes-unit-tests-f77.diff" | |
| runs-on: [ubuntu-latest] | |
| container: geodynamics/rayleigh-buildenv-jammy | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build documentation | |
| # First make sure notebooks do not contain output, then build doc | |
| run: | | |
| # this is to fix GIT not liking owner of the checkout dir | |
| # see https://github.com/actions/runner/issues/2033 | |
| chown -R $(id -u):$(id -g) $PWD | |
| cd "$GITHUB_WORKSPACE" | |
| make clear_ipynb && git diff --exit-code --name-only | |
| make doc | |
| - name: Build Rayleigh | |
| # Now build Rayleigh itself | |
| run: | | |
| ./configure -debian-mkl ${{ matrix.mpi }} --FFLAGS_DBG='-O0 -g -fbounds-check -ffpe-trap=invalid,zero,overflow -fbacktrace -ffixed-line-length-132 -Wall' | |
| make fdeps && git diff --exit-code | |
| make -j | |
| make install | |
| - name: Test | |
| run: | | |
| #Primary test (Chebyshev Mode) | |
| cd "$GITHUB_WORKSPACE"/tests/c2001_case0 | |
| mpirun -np 4 ../../bin/rayleigh.dbg | |
| # Finite-difference test (uniform grid) | |
| cd "$GITHUB_WORKSPACE"/tests/c2001_case0_FD_uniform | |
| mpirun -np 4 ../../bin/rayleigh.dbg | |
| # Generic input test | |
| cd "$GITHUB_WORKSPACE" | |
| sh ./tests/generic_input/run_test.sh | |
| # chi scalar test | |
| cd "$GITHUB_WORKSPACE" | |
| sh ./tests/chi_scalar/run_test.sh | |
| # custom reference state test | |
| cd "$GITHUB_WORKSPACE" | |
| sh ./tests/custom_reference/run_test.sh | |
| # coupled bc test | |
| cd "$GITHUB_WORKSPACE" | |
| sh ./tests/coupled_bcs/run_test.sh | |
| git diff > changes.diff | |
| git diff --exit-code --name-only | |
| - name: archive results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.result-file }} | |
| path: changes.diff | |
| - name: Unit Tests | |
| run: | | |
| cd "$GITHUB_WORKSPACE"/tests/unit_tests/SHT | |
| mpirun -np 4 ../../../bin/rayleigh.dbg > expected_output.out | |
| git diff > changes.diff | |
| git diff --exit-code --name-only | |
| - name: archive results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.unit-result-file }} | |
| path: tests/unit_tests/SHT/changes.diff | |
| conda: | |
| name: conda-build | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| runs-on: ${{ matrix.os }} | |
| # Needs to be here to properly detect changes to conda | |
| # see https://github.com/conda-incubator/setup-miniconda#IMPORTANT | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: radev | |
| environment-file: environment.yml | |
| channel-priority: strict | |
| auto-update-conda: true | |
| miniconda-version: "latest" | |
| - name: Build documentation | |
| run: | | |
| cd "$GITHUB_WORKSPACE" | |
| make doc | |
| - name: Build Rayleigh | |
| run: | | |
| cd "$GITHUB_WORKSPACE" | |
| ./configure --openblas --with-blas=$CONDA_PREFIX --with-fftw=$CONDA_PREFIX --FC=mpifort --FFLAGS_DBG='-O0 -g -fbounds-check -ffpe-trap=invalid,zero,overflow -fbacktrace -ffixed-line-length-132 -Wall' | |
| make -j | |
| make install | |
| - name: Build Rayleigh (CMake) | |
| run: | | |
| cd "$GITHUB_WORKSPACE" | |
| cmake -Bbuild | |
| cmake --build build -j -t install |