Updated dockerfile with paths and env

.circleci/config.yml

@@ -5,7 +5,6 @@ jobs:
       - image: docker pull ghcr.io/geoelements/gns:config
     steps:
       - checkout
-      # GCC
       - run:
           name: Train & Test
           command: |

.github/workflows/train.yml

@@ -1,6 +1,10 @@
 name: GNS Train and Test
 
 on:
+  workflow_run:
+    workflows: ["Build and Push to GHCR"]
+    types:
+      - completed
   push:
   pull_request:
 
@@ -14,6 +18,14 @@ jobs:
     - name: Checkout repository
       uses: actions/checkout@v4
 
+    - name: Wait for GHCR build
+      if: github.event_name == 'workflow_run'
+      run: echo "Build and Push to GHCR workflow completed, proceeding with GNS Train and Test"
+
+    - name: Run without waiting
+      if: github.event_name != 'workflow_run'
+      run: echo "Build and Push to GHCR not triggered, proceeding with GNS Train and Test"
+
     - name: Train & Test
       run: |
         TMP_DIR="./gns-sample"

Dockerfile

@@ -1,13 +1,25 @@
 FROM python:3.11
 
-WORKDIR /home/gns
+WORKDIR /app
 
 COPY requirements.txt .
 
-RUN pip3 install --upgrade pip
-RUN pip3 install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu --user
-RUN pip3 install torch_geometric --user
-RUN pip3 install pyg_lib torch_scatter torch_sparse torch_cluster torch_spline_conv -f https://data.pyg.org/whl/torch-2.3.0+cpu.html  --user
-RUN pip3 install -r requirements.txt
+RUN pip3 install --upgrade pip && \
+    pip3 install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu && \
+    pip3 install torch_geometric && \
+    pip3 install pyg_lib torch_scatter torch_sparse torch_cluster torch_spline_conv -f https://data.pyg.org/whl/torch-2.3.0+cpu.html && \
+    pip3 install -r requirements.txt
 
+ENV PYTHONPATH=/app
+
+# Add Python path to PATH
+ENV PATH="/usr/local/bin:${PATH}"
+
+# Create a bash script to set up the environment
+RUN echo '#!/bin/bash\n\
+export PYTHONPATH=/app\n\
+export PATH="/usr/local/bin:$PATH"\n\
+exec "$@"' > /entrypoint.sh && chmod +x /entrypoint.sh
+
+ENTRYPOINT ["/entrypoint.sh"]
 CMD ["/bin/bash"]