Reordering config to vc-test-run

getwilds · tefirman · Dec 13, 2024 · Dec 13, 2024 · Dec 13, 2024 · Dec 13, 2024
commit a2f18b668995825d209a615f7462ebc27b213e17
diff --git a/.github/workflows/variant-calling-test-run.yml b/.github/workflows/variant-calling-test-run.yml
@@ -185,7 +185,7 @@ jobs:
 
       - name: Run test workflow
         run: |
-          java -jar cromwell.jar run -Dconfig.file=cromwell.conf variantCalling/variantCalling.wdl -i test/test-inputs.json
+          java -Dconfig.file=cromwell.conf -jar cromwell.jar run variantCalling/variantCalling.wdl -i test/test-inputs.json
 
       - name: Check outputs
         run: |