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Patch/reduce exposure #51

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35 changes: 5 additions & 30 deletions GF.csv
Original file line number Diff line number Diff line change
Expand Up @@ -345,44 +345,19 @@ Smoking Exposure,Indicate if individual has smoking exposure,"Yes - Smoking Expo
Yes - Smoking Exposure,Individual has been exposed to smoke; requires additional metadata,"","Years Smoked, Pack Years Smoked, Cigarettes per Day, Smoking Frequency, Type of Smoke Exposure, Time between Waking and First Smoke, Tobacco Smoking Onset Year, Tobacco Smoking Quit Year, Tobacco Smoking Status, Type of Tobacco Used, Secondhand Smoke as Child, Smoke Exposure Duration, Tobacco Use per Day, Smokeless Tobacco Quit Age","",FALSE,Exposure,"","",""
Pack Years Smoked,Numeric computed value to represent lifetime tobacco exposure defined as number of cigarettes smoked per day x number of years smoked divided by 20.,"","","",TRUE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2955385&version=1.0,""
Years Smoked,Numeric value (or unknown) to represent the number of years a person has been smoking.,"","","",TRUE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=3137957&version=1.0,""
Smoking Frequency,The text term used to generally decribe how often the patient smokes.,"Every day, Some days, unknown","","",FALSE,Exposure,"","",""
Secondhand Smoke as Child,The text term used to indicate whether the patient was exposed to secondhand smoke as a child.,"Yes, No, unknown, Not Reported","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=6841888&version=1.0,""
Tobacco Use per Day,Numeric value that represents the number of times the patient uses tobacco each day.,"","","",FALSE,Exposure,"","",""
Tobacco Smoking Status,Category describing current smoking status and smoking history as self-reported by a patient,"Lifelong Non-Smoker, Current Smoker, Current Reformed Smoker for > 15 yrs, Current Reformed Smoker for < or = 15 yrs, Current Reformed Smoker, Duration Not Specified, Smoking history not documented, unknown, Not Reported","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2181650&version=1.0,""
Alcohol Exposure,Indicate if individual has alcohol exposure,"Yes - Alcohol Exposure, No - Alcohol Exposure, Not Reported","","",TRUE,Exposure,"","",""
Yes - Alcohol Exposure,"","","Alcohol Days Per Week, Alcohol Drinks Per Day, Alcohol History, Alcohol Intensity, Alcohol Type","",FALSE,Exposure,"","",""
Alcohol Days Per Week,Numeric value used to describe the average number of days each week that a person consumes an alcoholic beverage.,"","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=3114013&version=1.0,""
Alcohol Drinks Per Day,Numeric value used to describe the average number of alcoholic beverages a person consumes per day.,"","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=3124961&version=1.0,""
Alcohol History,A response to a question that asks whether the participant has consumed at least 12 drinks of any kind of alcoholic beverage in their lifetime.,"Yes, No, unknown, Not Reported","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2201918&version=1.0,""
Alcohol Intensity,Category to describe the patient's current level of alcohol use as self-reported by the patient.,"Drinker, Heavy Drinker, Lifelong Non-Drinker, Non-Drinker, Occasional Drinker, unknown, Not Reported","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=3457767&version=1.0,""
Alcohol Type,Type of alcohol use,"Beer, Liquor, Other, Wine, unknown, Not Reported","","",FALSE,Exposure,"","",""
Asbestos Exposure,The yes/no/unknown indicator used to describe whether the patient was exposed to asbestos.,"Yes, No, unknown, Not Reported","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=1253&version=3.0,""
Cigarettes per Day,The average number of cigarettes smoked per day.,"","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2001716&version=4.0,""
Coal Dust Exposure,The yes/no/unknown indicator used to describe whether a patient was exposed to fine powder derived by the crushing of coal.,"Yes, No, unknown","","",FALSE,Exposure,"","",""
Environmental Tobacco Smoke Exposure,"The yes/no/unknown indicator used to describe whether a patient was exposed to smoke that is emitted from burning tobacco, including cigarettes, pipes, and cigars. This includes tobacco smoke exhaled by smokers.","Yes, No, unknown","","",FALSE,Exposure,"","",""
Radon Exposure,The yes/no/unknown indicator used to describe whether the patient was exposed to radon.,"Yes, No, unknown, Not Reported","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2816352&version=1.0,""
Respirable Crystalline Silica Exposure,"The yes/no/unknown indicator used to describe whether a patient was exposured to respirable crystalline silica, a widespread, naturally occurring, crystalline metal oxide that consists of different forms including quartz, cristobalite, tridymite, tripoli, ganister, chert and novaculite.","Yes, No, unknown","","",FALSE,Exposure,"","",""
Smoking Frequency,The text term used to generally decribe how often the patient smokes.,"Every day, Some days, unknown","","",FALSE,Exposure,"","",""
Secondhand Smoke as Child,The text term used to indicate whether the patient was exposed to secondhand smoke as a child.,"Yes, No, unknown, Not Reported","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=6841888&version=1.0,""
Smoke Exposure Duration,Text term used to describe the length of time the patient was exposed to an environmental factor.,"Six Weeks or More, unknown,Not Reported","","",FALSE,Exposure,"","",""
Type of Smoke Exposure,The text term used to describe the patient's specific type of smoke exposure.,"Accidental building fire smoke,Accidental grass fire smoke, Accidental fire smoke NOS,Accidental forest fire smoke,Accidental vehicle fire smoke,Aircraft smoke,Burning tree smoke,Coal smoke NOS, Cooking related smoke NOS,Electronic cigarette smoke NOS,Electrical fire smoke,Environmental tobacco smoke,Factory smokestack smoke,Field burning smoke,Fire smoke NOS,Furnace or boiler smoke,Gas burning smoke propane,Grease fire smoke,Grilling smoke,Hashish smoke,Indoor coal burning stove or fireplace smoke,Indoor stove or fireplace smoke NOS,Indoor wood burning stove or fireplace smoke,Machine smoke,Marijuana smoke,No Smoke Exposure,Oil burning smoke Kerosene,Oil burning smoke NOS,Recreational fire smoke,Smoke exposure NOS,Smokehouse smoke,Tobacco smoke cigar,Tobacco smoke cigarettes,Tobacco smoke pipe,unknown,Volcanic smoke,Waste burning smoke,Wood burning smoke factory,Wood burning smoke NOS, Workrelated smoke artificial smoke machines, Workrelated smoke fire fighting,Workrelated smoke foundry,Workrelated smoke generators,Workrelated smoke military,Workrelated smoke NOS,Workrelated smoke paint baking,Workrelated smoke plastics factory,Workrelated smoke plumbing,Workrelated smoke soldering/welding","","",FALSE,Exposure,"","",""
Marijuana smoke,Marijuana smoke exposure,"",Marijuana Use Per Week,"",FALSE,Exposure,"","",""
Marijuana Use Per Week,Numeric value that represents the number of times the patient uses marijuana each day.,"","","",FALSE,Exposure,"","",""
Tobacco Use per Day,Numeric value that represents the number of times the patient uses tobacco each day.,"","","",FALSE,Exposure,"","",""
Smokeless Tobacco Quit Age,Smokeless tobacco quit age,"","","",FALSE,Exposure,"","",""
Time Between Waking and First Smoke,The text term used to describe the approximate amount of time elapsed between the time the patient wakes up in the morning to the time they smoke their first cigarette.,"Within 5 Minutes, 6-30 Minutes, 31-60 Minutes, After 60 Minutes, unknown","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=3279220&version=1.0,""
Tobacco Smoking Onset Year,The year in which the participant began smoking.,"","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2228604&version=1.0,""
Tobacco Smoking Quit Year,The year in which the participant quit smoking.,"","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2228610&version=1.0,""
Tobacco Smoking Status,Category describing current smoking status and smoking history as self-reported by a patient,"Lifelong Non-Smoker, Current Smoker, Current Reformed Smoker for > 15 yrs, Current Reformed Smoker for < or = 15 yrs, Current Reformed Smoker, Duration Not Specified, Smoking history not documented, unknown, Not Reported","","",FALSE,Exposure,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=2181650&version=1.0,""
Type of Tobacco Used,The text term used to describe the specific type of tobacco used by the patient.,"Cigarettes, Cigar, Electronic Cigarette, Other, Pipe, Smokeless Tobacco, Marijuana","","",FALSE,Exposure,"","",""
COVID19 Occurrence Indicator,The indicator that describes whether or not a COVID-19 infectious disorder occurred.,"Yes, No, unknown, Not Applicable, Not Done","","",FALSE,Exposure,"","",""
COVID19 Current Status,The patient's current COVID-19 status of sign or symptom events or interventions,"Patient currently has symptoms, Patient had symptoms but now is fully recovered, Patient never had any symptoms of COVID-19, Status unknown due to general COVID-19 related travel restrictions, Status unknown due to lack of disease/tumor assessment due to COVID-19 diagnosis, Status unknown due to other reasons","","",FALSE,Exposure,"","",""
COVID19 Positive Lab Test Indicator,The indicator that describes whether or not there was a COVID-19 positive test result.,"Yes, No, unknown, Not Applicable, Not Done","","",FALSE,Exposure,"","",""
COVID19 Antibody Testing,Text term that demonstrates the test results of immunoglobulin M (IgM) and immunoglobulin G (IgG) antibodies to the SARS-CoV-2 virus in subject serum samples.,"SARS-CoV-2 IgM antibody positive, SARS-CoV-2 IgG antibody positive, SARS-CoV-2 IgG/IgM antibody positive, SARS-CoV-2 IgM antibody negative, SARS-CoV-2 IgG antibody negative, SARS-CoV-2 IgG/IgM antibody negative, unknown, Not Applicable, Not Done","","",FALSE,Exposure,"","",""
COVID19 Complications Severity,Text term that retrospectively indicates the worst complications during COVID-19 infectious disorder in the patient.,"Cardiac complications, Pulmonary complications, Systemic complications, Other, Not Applicable, unknown","","",FALSE,Exposure,"","",""
COVID19 Cancer Treatment Followup,Indicator that describes if cancer treatment was modified for the patient due to COVID-19 infectious disorder,"Yes, No, unknown, Not Applicable","","",FALSE,Exposure,"","",""
Ecig vape use,"Use of non-traditional cigarette nicotine delivery device (electronic cigarette, ENDS - electronic nicotine delivery system)","Current, Former, Never, unknown","","",FALSE,Exposure,"","",""
Ecig vape 30 day use num,Number of days e-cigarettes or vaping device was used in the last 30 days,"","","",FALSE,Exposure,"","",""
Ecig vape times per day,e-cig frequency of use (times per day—one “time” consists of around 15 puffs or lasts around 10 minutes),"","","",FALSE,Exposure,"","",""
Type of smoke exposure cumulative years,The number of cumulative years of the patient's specific type of smoke exposure,"","","",FALSE,Exposure,"","",""
Chewing tobacco daily use count,"The quantity of daily use of tobacco, in the form of a plug, usually flavored, for chewing rather than smoking.","","","",FALSE,Exposure,"","",""
Second hand smoke exposure years,The number of cumulative years of the patient's exposure to second-hand cigarette smoke,"","","",FALSE,Exposure,"","",""
Antibiotic Use,"Antibiotic use","No, Yes - within last monthh, Yes - within last 1-6 months, Yes - over 6 months ago,unknown","","",FALSE,Exposure,"","",""
Relationship Gender,The text term used to describe the gender of the patient's relative with a history of cancer.,"Female, Male, unknown, unspecified, Not Reported","","",FALSE,Family History,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=6161021&version=1.0,""
Relationship Age at Diagnosis,The age (in years) when the patient's relative was first diagnosed.,"","","",FALSE,Family History,"",https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search?publicId=5300571&version=1.0,""
Expand Down Expand Up @@ -496,7 +471,7 @@ Breast Cancer Tier 3,Breast cancer specific attributes in Clinical Data Tier 3,"
Ovarian Cancer Tier 3,Ovarian cancer specific attributes in Clinical Data Tier 3,"","Component, Participant ID, Timepoint Label, Start Days from Index, Stop Days from Index,Ovarian Cancer Histologic Subtype, Ovarian Cancer Surgical Outcome, Ovarian Cancer Platinum Status","",FALSE,Patient,Patient,"",""
Demographics,Individual biomedical demographics attributes,"","Component, Participant ID, Ethnicity, Gender, Race, Vital Status, Days to Birth, Country of Residence, Age Is Obfuscated, Year Of Birth, Occupation Duration Years, Premature At Birth, Weeks Gestation at Birth","",FALSE,Patient,"","",""
Family History,Individual's family cancer history,"","Component, Participant ID, Relative with Cancer History","",FALSE,Patient,"","",""
Exposure,Individual's exposure to carcenogens,"","Component, Participant ID, Start Days from Index, Smoking Exposure, Alcohol Exposure, Asbestos Exposure, Coal Dust Exposure, Environmental Tobacco Smoke Exposure, Radon Exposure, Respirable Crystalline Silica Exposure","",FALSE,Patient,"","",""
Exposure,Individual's exposure to carcenogens,"","Component, Participant ID, Start Days from Index, Smoking Exposure, Alcohol Exposure, Environmental Tobacco Smoke Exposure","",FALSE,Patient,"","",""
Follow Up,Individual's follow up exams,"","Component, Participant ID, Days to Follow Up, Adverse Event, Progression or Recurrence, Barretts Esophagus Goblet Cells Present, BMI, Cause of Response, Comorbidity, Comorbidity Method of Diagnosis, Days to Adverse Event, Days to Comorbidity, Diabetes Treatment Type, Disease Response, DLCO Ref Predictive Percent, ECOG Performance Status, FEV1 FVC Post Bronch Percent, FEV 1 FVC Pre Bronch Percent, FEV1 Ref Post Bronch Percent, FEV1 Ref Pre Bronch Percent, Height, Hepatitis Sustained Virological Response, HPV Positive Type, Karnofsky Performance Status, Menopause Status, Pancreatitis Onset Year, Reflux Treatment Type, Risk Factor, Risk Factor Treatment, Viral Hepatitis Serologies, Weight, Adverse Event Grade, AIDS Risk Factors, Body Surface Area, CD4 Count, CDC HIV Risk Factors, Days to Imaging, Evidence of Recurrence Type, HAART Treatment Indicator, HIV Viral Load, Hormonal Contraceptive Use, Hysterectomy Margins Involved, Hysterectomy Type, Imaging Result, Imaging Type, Immunosuppressive Treatment Type, Nadir CD4 Count, Pregnancy Outcome, Recist Targeted Regions Number, Recist Targeted Regions Sum, Scan Tracer Used","",FALSE,Patient,"","",""
Therapy,Individual's first line of therapy or treatment,"","Component, Participant ID, Treatment or Therapy, Treatment Type, Treatment Effect, Treatment Outcome, Days to Treatment End, Treatment Anatomic Site, Days to Treatment Start, Initial Disease Status, Regimen or Line of Therapy, Therapeutic Agents, Treatment Intent Type, Chemo Concurrent to Radiation, Number of Cycles, Reason Treatment Ended, Treatment Arm, Treatment Dose, Treatment Dose Units, Treatment Effect Indicator, Treatment Frequency","",FALSE,Patient,"","",""
Diagnosis,Individual's diagnosis,"","Component, Participant ID, Age at Diagnosis, Year of Diagnosis, Primary Diagnosis, Site of Resection or Biopsy, Tissue or Organ of Origin, Morphology, Tumor Grade, Progression or Recurrence, Last Known Disease Status, Days to Last Follow up, Days to Last Known Disease Status, Method of Diagnosis, Prior Malignancy, Prior Treatment, Metastasis at Diagnosis, Metastasis at Diagnosis Site, First Symptom Prior to Diagnosis, Days to Diagnosis, Percent Tumor Invasion, Residual Disease, Synchronous Malignancy, Tumor Confined to Organ of Origin, Tumor Focality, Tumor Largest Dimension Diameter, Gross Tumor Weight, Breslow Thickness, Vascular Invasion Present, Vascular Invasion Type, Anaplasia Present, Anaplasia Present Type, Laterality, Perineural Invasion Present, Lymphatic Invasion Present, Lymph Nodes Positive, Lymph Nodes Tested, Peritoneal Fluid Cytological Status, Classification of Tumor, Best Overall Response, Mitotic Count, AJCC Clinical M, AJCC Clinical N, AJCC Clinical Stage, AJCC Clinical T, AJCC Pathologic M, AJCC Pathologic N, AJCC Pathologic Stage, AJCC Pathologic T, AJCC Staging System Edition, Cog Neuroblastoma Risk Group, Cog Rhabdomyosarcoma Risk Group, Gleason Grade Group, Gleason Grade Tertiary, Gleason Patterns Percent, Greatest Tumor Dimension, IGCCCG Stage, INPC Grade, INPC Histologic Group, INRG Stage, INSS Stage, International Prognostic Index, IRS Group, IRS Stage, ISS Stage, Lymph Node Involved Site, Margin Distance, Margins Involved Site, Medulloblastoma Molecular Classification, Micropapillary Features, Mitosis Karyorrhexis Index, Non Nodal Regional Disease, Non Nodal Tumor Deposits, Ovarian Specimen Status, Ovarian Surface Involvement, Pregnant at Diagnosis, Primary Gleason Grade, Secondary Gleason Grade, Supratentorial Localization, Tumor Depth, Tumor Grade, WHO CNS Grade, WHO NTE Grade","",FALSE,Patient,"","",""
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