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Temporary update to latest model #13
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| # Deploy to shinyapps using a pre-built image | |
| # Workflow dispatch allows to specify image -- default results in `ghcr.io/gf-dcc/data_curator:latest` | |
| # The app name is explicitly specified instead of derived from repo/branch name | |
| name: Shortcut shinyapps deploy via image | |
| on: | |
| push: | |
| branches: | |
| - staging | |
| env: | |
| APP_NAME: gf-data-curator-dev | |
| DATA_MODEL: https://raw.githubusercontent.com/gf-dcc/data-model/main/GF.jsonld | |
| jobs: | |
| # TO-DO: Add job to do testing | |
| shiny-deploy: | |
| runs-on: ubuntu-latest | |
| environment: development | |
| container: ghcr.io/gf-dcc/data_curator:latest | |
| defaults: | |
| run: | |
| working-directory: /home/app | |
| steps: | |
| - name: Provide the custom assets (model, configuration, and creds) for schematic | |
| shell: bash | |
| run: | | |
| mkdir data-models | |
| curl https://raw.githubusercontent.com/gf-dcc/data-model/main/GF.jsonld > data-models/GF.jsonld | |
| curl https://raw.githubusercontent.com/$GITHUB_REPOSITORY/staging/schematic_config.yml > schematic_config.yml | |
| sudo chmod -R 777 www | |
| curl https://raw.githubusercontent.com/$GITHUB_REPOSITORY/staging/www/config.json > www/config.json | |
| echo "${{ secrets.SCHEMATIC_SYNAPSE_CONFIG }}" > .synapseConfig | |
| echo "${{ secrets.SCHEMATIC_SERVICE_ACCT_CREDS }}" | base64 --decode > schematic_service_account_creds.json | |
| echo ---- App assets to be bundled for deployment ---- | |
| ls -a | |
| - name: Authorize and deploy app | |
| shell: Rscript {0} | |
| run: | | |
| appName <- "${{ env.APP_NAME }}" | |
| rsConnectUser <- "${{ secrets.RSCONNECT_USER }}" | |
| rsConnectToken <- "${{ secrets.RSCONNECT_TOKEN }}" | |
| rsConnectSecret <- "${{ secrets.RSCONNECT_SECRET }}" | |
| # create config file | |
| config <- "CLIENT_ID: ${{ secrets.OAUTH_CLIENT_ID }}" | |
| config <- c(config, "CLIENT_SECRET: ${{ secrets.OAUTH_CLIENT_SECRET }}") | |
| appUrl <- sprintf("https://%s.shinyapps.io/%s", rsConnectUser, appName) | |
| config <- c(config, sprintf("APP_URL: %s", appUrl)) | |
| configFileConn <- file("oauth_config.yml") | |
| tryCatch( | |
| writeLines(config, configFileConn), | |
| finally=close(configFileConn) | |
| ) | |
| rsconnect::setAccountInfo(rsConnectUser, rsConnectToken, rsConnectSecret) | |
| rsconnect::deployApp(appName = appName) |