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re-arrange resources for dkfz cluster #34

Merged
merged 13 commits into from
Jun 11, 2024
Merged

re-arrange resources for dkfz cluster #34

merged 13 commits into from
Jun 11, 2024

Commits on Apr 30, 2024

  1. re-arrange resources for dkfz cluster

    @kubranarci
    kubranarci committed Apr 30, 2024
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Commits on May 7, 2024

  1. dealing better with contigs

    @kubranarci
    kubranarci committed May 7, 2024
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Commits on May 8, 2024

  1. MAFcommon added

    @kubranarci
    kubranarci committed May 8, 2024
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Commits on May 14, 2024

  1. fix interval problem

    @kubranarci
    kubranarci committed May 14, 2024
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Commits on May 17, 2024

  1. config processing fixed

    @kubranarci
    kubranarci committed May 17, 2024
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Commits on May 21, 2024

  1. fix config channel

    @kubranarci
    kubranarci committed May 21, 2024
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  2. final final fix contigs

    @kubranarci
    kubranarci committed May 21, 2024
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Commits on Jun 7, 2024

  1. Update on MAFCommon info

    @NagaComBio
    NagaComBio committed Jun 7, 2024
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  2. Update singularity cacheDir

    @NagaComBio
    NagaComBio committed Jun 7, 2024
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  3. Sort seq_context_annotated and npileup

    @NagaComBio
    NagaComBio committed Jun 7, 2024
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  4. Refactor vcf_pileup_compare_allin1_basecount.pl to handle multi-chr i… 

    …n single pass
    @NagaComBio
    NagaComBio committed Jun 7, 2024
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Commits on Jun 10, 2024

  1. Reduce ctrl_qual_cutoff to one for ALT/HLA contigs

    @NagaComBio
    NagaComBio committed Jun 10, 2024
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Commits on Jun 11, 2024

  1. fix ctrl params in mpileup_compare

    @kubranarci
    kubranarci committed Jun 11, 2024
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