chore: change setup management

ecgem/__init__.py

@@ -1 +1 @@
-from .dirt import from_copy_number, from_mmol_gDW
+from .io import from_copy_number, from_mmol_gDW

setup.cfg

@@ -1,3 +1,28 @@
+[metadata]
+name = ecgem
+description = Enzyme Constraint genome-scale models
+keywords = 
+  python
+  metabolic-models 
+  bioinformatics 
+  systems-biology
+long_description = file: README.md
+version = 0.0.1
+
+[options]
+zip_safe = True
+install_requires =
+    cobra~=0.20.0
+    pandas~=1.1.5
+packages = find:
+
+[options.extras_require]
+dev =
+  black
+  isort
+  tox
+  pytest
+
 [flake8]
 max-line-length = 88
-exlude = __init__.py
+exclude = __init__.py

setup.py

@@ -1,18 +1,4 @@
-from setuptools import setup, find_packages
+from setuptools import setup
 
-
-def readme():
-    with open("README.md") as f:
-        return f.read()
-
-
-setup(
-    name="ecgem",
-    version="0.0.1",
-    description="Enzyme Constraint genome-scale models",
-    keywords="python metabolic-models bioinformatics systems-biology",
-    license="MIT",
-    packages=find_packages(),
-    install_requires=["cobra==0.20.0", "pandas==1.1.5"],
-    zip_safe=False,
-)
+if __name__ == "__main__":
+    setup()