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Clarify the OME-Zarr expectations for omero-zarr-pixel-buffer
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sbesson committed Jun 27, 2024
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Expand Up @@ -25,7 +25,14 @@ object with the following properties:
- `lsid` must be set to the location of the Zarr data:
- the absolute path to the dataset if available via the filesystem
- an URI defined as `s3://s3.<region>.amazonaws.com/<bucket>/<path/to/dataset.zarr>`
for datasets stored on Amazon S3
for datasets stored on Amazon S3

The Zarr dataset must be conformant with the default layout generated by `bioformats2raw` i.e.:

- the version of the NGFF specification must be 0.4
- the image and the Zarr multiscales group must have 5 declared dimensions
- the chunks must be stored in the (t, c, z, y, x) order
- the resolution level must be downsampled along the (y, x) axis

Permissions for accessing Zarr dataset hosted on S3 buckets can be managed:

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