Add marburg template

globaldothealth · Aug 28, 2024 · abe7a36 · abe7a36
1 parent d07a664
commit abe7a36
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diff --git a/.gitignore b/.gitignore
@@ -9,7 +9,7 @@ __pycache__/
 
 # only html in outbreaks folder
 *.html
-!tests/outbreaks/*.html
+!src/obr/outbreaks/*.html
 
 # C extensions
 *.so

diff --git a/src/obr/outbreaks/marburg.html b/src/obr/outbreaks/marburg.html
@@ -0,0 +1,109 @@
+<!DOCTYPE html>
+<html>
+
+<head>
+    <meta charset="UTF-8">
+    <meta name="viewport" content="width=device-width, initial-scale=1">
+    <title>Marburg 2023 Equatorial Guinea Outbreak - {{ published_date }}</title>
+    <meta name="description" content="Marburg 2023 outbreak briefing report from Global.health">
+    <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/water.css@2/out/light.css">
+    <link href="https://fonts.googleapis.com/css2?family=Inter:wght@300;400;500;600&display=swap" rel="stylesheet">
+    <link rel="stylesheet" href="https://www.monkeypox.global.health/style.css">
+    <link rel="shortcut icon" type="image/x-icon"
+        href="https://global.health/wp-content/uploads/2020/10/gs-favicon-green.png">
+    <link rel="apple-touch-icon" href="https://global.health/wp-content/uploads/2020/10/gs-favicon-green.png">
+    <script src="https://cdn.plot.ly/plotly-2.12.1.min.js"></script>
+</head>
+
+<body>
+    <main>
+        <nav>
+            <img class="logo" src="https://global.health/wp-content/uploads/2020/07/gh-logo-full-black.png"
+                alt="Global.health logo"></li>
+            <ul>
+                <li><a href="https://l66noa47nk.execute-api.eu-central-1.amazonaws.com/web">Data</a></li>
+                <li><a href="https://github.com/globaldothealth/marburg">GitHub</a></li>
+            </ul>
+        </nav>
+        <h1>Marburg 2023 Equatorial Guinea Outbreak<br>{{ published_date }}</h1>
+        <p class="byline">From the <a href="https://global.health">Global.health</a> team (<a
+                href="mailto:[email protected]">[email protected]</a>)
+        </p>
+
+        <h2>Summary</h2>
+
+        {{#info}}
+        <div class="info">
+            <p>{{ info }}</p>
+        </div>
+        {{/info}}
+
+        <p class="summary">
+            <strong>{{ n_confirmed }}</strong> confirmed and <strong>{{ n_probable }}</strong>
+            probable cases as of {{ date }}
+        </p>
+
+        <figure>
+
+            {{{ epicurve }}}
+
+            <figcaption>
+                <strong>Figure 1</strong>: Number of cumulative confirmed and probable cases
+                by date of onset. Where date of onset is not available, it is
+                estimated from the date of first consult/hospitalisation or date
+                of death, by shifting the value by the delay distribution mean.
+                Only cases where date of onset is known or can be estimated are shown.
+            </figcaption>
+        </figure>
+
+        <figure>
+
+            {{{ epicurve_location_status }}}
+
+            <figcaption>
+                <strong>Figure 2</strong>: Number of cumulative confirmed and probable cases
+                stratified by district. Date of onset is estimated when not available as in Figure 1.
+                Only cases where date of onset is known or can be estimated and have a corresponding
+                district are shown.
+            </figcaption>
+        </figure>
+
+        <figure>
+
+            {{{ age_gender }}}
+            <figcaption>
+                <strong>Figure 3</strong>: Age and gender distribution of
+                Marburg 2023 confirmed cases in Equatorial Guinea.
+                {{ pc_valid_age_gender }}% of confirmed cases include
+                sufficient metadata to be included in this figure. When reported
+                age ranges span multiple age categories, counts are evenly
+                distributed among the categories that capture the reported age
+                range.
+            </figcaption>
+        </figure>
+
+        <figure>
+
+            {{{ delay_distribution_consult }}}
+
+            {{{ delay_distribution_death }}}
+
+            <figcaption>
+                <strong>Figure 4</strong>: Delay distributions from date of
+                symptom onset A) Between onset and first consult B) Between
+                onset and death. Only includes cases that have both date of onset
+                and either date of first consult (A) or date of death (B).
+            </figcaption>
+        </figure>
+
+        <p><strong>Data accessibility and reproducibility</strong>: All data
+            used in this report are available from our <a
+                href="https://l66noa47nk.execute-api.eu-central-1.amazonaws.com/web">data
+                repository</a>. Should you identify any issues or have questions please
+            raise an issue on <a href="https://github.com/globaldothealth/marburg">GitHub</a> or write to
+            us: <a href="mailto:[email protected]">[email protected]</a>.</p>
+
+    </main>
+</body>
+
+</html>