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Merge pull request #87 from glycojones/add_citation
Add Citation Modal
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,137 @@ | ||
| import React, { type Dispatch, type SetStateAction } from 'react'; | ||
| import Modal from 'react-modal'; | ||
|
|
||
| const customStyles = { | ||
| content: { | ||
| top: '50%', | ||
| left: '50%', | ||
| right: 'auto', | ||
| bottom: 'auto', | ||
| // // marginRight: '-50%', | ||
| transform: 'translate(-50%, -50%)', | ||
| color: 'black', | ||
| borderRadius: 10, | ||
| overflowY: 'auto', | ||
| maxHeight: '100vh', | ||
| }, | ||
| }; | ||
|
|
||
| export default function CitationModal(props: { | ||
| modalOpen: boolean; | ||
| setModalOpen: Dispatch<SetStateAction<boolean>>; | ||
| }) { | ||
| const handleModalClose = () => { | ||
| props.setModalOpen(false); | ||
| }; | ||
|
|
||
| return ( | ||
| <div className="max-h-screen overflow-auto"> | ||
| <Modal | ||
| isOpen={props.modalOpen} | ||
| onRequestClose={handleModalClose} | ||
| contentLabel="Example Modal" | ||
| style={customStyles} | ||
| > | ||
| <div className="flex flex-row w-full space-between "> | ||
| <h2 className="mr-16 sm:mr-96">Citations</h2> | ||
| <button | ||
| type="button" | ||
| onClick={handleModalClose} | ||
| className="text-gray-400 bg-transparent hover:scale-105 rounded-lg text-sm w-8 h-8 ms-auto inline-flex justify-center items-center " | ||
| > | ||
| <svg | ||
| className="w-3 h-3" | ||
| aria-hidden="true" | ||
| xmlns="http://www.w3.org/2000/svg" | ||
| fill="none" | ||
| viewBox="0 0 14 14" | ||
| > | ||
| <path | ||
| stroke="currentColor" | ||
| strokeLinecap="round" | ||
| strokeLinejoin="round" | ||
| strokeWidth="2" | ||
| d="m1 1 6 6m0 0 6 6M7 7l6-6M7 7l-6 6" | ||
| /> | ||
| </svg> | ||
| <span className="sr-only">Close modal</span> | ||
| </button> | ||
| </div> | ||
|
|
||
| <div className="mt-4 flex flex-col space-y-2 text-sm sm:text-base"> | ||
| <h3> | ||
| If you have used the{' '} | ||
| <b> | ||
| <i>Privateer Web App</i> | ||
| </b> | ||
| , please cite:{' '} | ||
| </h3> | ||
| <strong> | ||
| Dialpuri, J. S., Bagdonas, H., Schofield, L. C., Pham, | ||
| P. T., Holland, L., Bond, P. S., Sánchez Rodríguez, F., | ||
| McNicholas, S. J. & Agirre, J. (2024). Online | ||
| carbohydrate 3D structure validation with the Privateer | ||
| web app. Acta Cryst. F80. | ||
| https://doi.org/10.1107/S2053230X24000359 | ||
| </strong> | ||
| </div> | ||
|
|
||
| {/* <div className="mt-4 flex flex-col space-y-2"> */} | ||
| {/* <h3>If you have used the <b><i>Privateer Database</i></b>, please cite: </h3> */} | ||
| {/* <span>Dialpuri, J. S., Bagdonas, H., Schofield, L. C., Pham, P. T., Holland, L., Bond, P. S., Sánchez Rodríguez, F., McNicholas, S. J. & Agirre, J. (2024). Online carbohydrate 3D structure validation with the Privateer web app. Acta Cryst. F80. https://doi.org/10.1107/S2053230X24000359</span> */} | ||
| {/* </div> */} | ||
|
|
||
| <div className="mt-4 flex flex-col space-y-2 font text-sm sm:text-base"> | ||
| <h3> | ||
| The <i>Privateer Web App</i> is possible thanks to these | ||
| foundational studies: | ||
| </h3> | ||
| <span> | ||
| Dialpuri, J. S., Bagdonas, H., Atanasova, M., Schofield, | ||
| L. C., Hekkelman, M. L., Joosten, R. P., & Agirre, J. | ||
| (2023). Analysis and validation of overall N-glycan | ||
| conformation in Privateer. Acta Crystallographica | ||
| Section D: Structural Biology, 79(6). | ||
| </span> | ||
| <span> | ||
| Bagdonas, H., Ungar, D., & Agirre, J. (2020). Leveraging | ||
| glycomics data in glycoprotein 3D structure validation | ||
| with Privateer. Beilstein Journal of Organic Chemistry, | ||
| 16(1), 2523-2533. | ||
| </span> | ||
| <span> | ||
| McNicholas, S., & Agirre, J. (2017). Glycoblocks: a | ||
| schematic three-dimensional representation for glycans | ||
| and their interactions. Acta Crystallographica Section | ||
| D: Structural Biology, 73(2), 187-194. | ||
| </span> | ||
| <span> | ||
| Atanasova, M., Nicholls, R. A., Joosten, R. P., & | ||
| Agirre, J. (2022). Updated restraint dictionaries for | ||
| carbohydrates in the pyranose form. Acta | ||
| Crystallographica Section D: Structural Biology, 78(4), | ||
| 455-465. | ||
| </span> | ||
| <span> | ||
| Agirre, J., Iglesias-Fernández, J., Rovira, C., Davies, | ||
| G. J., Wilson, K. S., & Cowtan, K. D. (2015). Privateer: | ||
| software for the conformational validation of | ||
| carbohydrate structures. Nature structural & molecular | ||
| biology, 22(11), 833-834. | ||
| </span> | ||
| <span> | ||
| Agirre, J., Davies, G., Wilson, K., & Cowtan, K. (2015). | ||
| Carbohydrate anomalies in the PDB. Nature chemical | ||
| biology, 11(5), 303-303. | ||
| </span> | ||
| <span> | ||
| Atanasova, M., Bagdonas, H., & Agirre, J. (2020). | ||
| Structural glycobiology in the age of electron | ||
| cryo-microscopy. Current Opinion in Structural Biology, | ||
| 62, 70-78. | ||
| </span> | ||
| </div> | ||
| </Modal> | ||
| </div> | ||
| ); | ||
| } |