Update webapp dependencies

.github/workflows/backend.yml

@@ -31,19 +31,15 @@ jobs:
 
     - name: Check out libraries
       run : |
-        git clone https://github.com/Dialpuri/privateer_webserver_dependencies.git 
-        cd privateer_webserver_dependencies
-        cp -r * ../
-        cd .. 
-        ls 
-
+        ./get_sources
+
     - name: Setup cmake
-      uses: jwlawson/actions-setup-cmake@v1.13    
+      uses: jwlawson/actions-setup-cmake@v2   
 
     - name: Build
       run : | 
         source ./emsdk/emsdk_env.sh
-        emcmake cmake . -D MODE=TESTING
+        emcmake cmake .
         emmake make -j 
 
 

CMakeLists.txt

@@ -21,11 +21,9 @@ add_compile_options(--preload-file data/linkage_torsions@/)
 
 set(CLIBDENV $ENV{CLIBD})
 
-# find_package(zlib)
-# add_subdirectory(checkout/zlib)
-
 if (MODE STREQUAL "TESTING") 
 else() 
+  add_subdirectory(gemmi)
   add_subdirectory(ccp4)
   add_subdirectory(rfftw)
   add_subdirectory(fftw)
@@ -41,22 +39,21 @@ else()
   add_subdirectory(clipper/gemmi)
 endif()
 
-# add_subdirectory(ccp4srs)
-
-
 set(PRIVATEER_SOURCE ${PRIVATEER_SOURCE_DIR}/cpp/privateer.cpp)
 
-
 include_directories(${CMAKE_CURRENT_SOURCE_DIR}
  checkout/mmdb2 
  checkout/ssm/ssm 
  checkout/libccp4/ccp4 
  checkout/clipper 
  checkout/gemmi/include
+ checkout/gemmi
  dependencies/gemmi
  checkout/zlib
  ${PRIVATEER_SOURCE_DIR}/cpp
  ${PRIVATEER_SOURCE_DIR}/cpp/pybind11
+  ${PRIVATEER_SOURCE_DIR}/cpp/third-party/simdjson/
+
 #  checkout/ccp4srs   
  )
 
@@ -112,8 +109,8 @@ add_library(privateer_lib
             # ${PRIVATEER_SOURCE_DIR}/cpp/pybind11/privateer-pyanalysis.cpp
             # ${PRIVATEER_SOURCE_DIR}/cpp/pybind11/privateer-pymodelling.cpp
             ${PRIVATEER_SOURCE_DIR}/cpp/clipper-glyco_data.cpp
-            ${PRIVATEER_SOURCE_DIR}/cpp/privateer-bind.cpp
-
+           # ${PRIVATEER_SOURCE_DIR}/cpp/privateer-bind.cpp
+            ${PRIVATEER_SOURCE_DIR}/cpp/third-party/simdjson/simdjson.cpp
             )
 
 
@@ -122,7 +119,7 @@ add_executable(privateer_exec ${PRIVATEER_SOURCE_DIR}/cpp/privateer-bind.cpp)
 
 set_target_properties (privateer_exec  PROPERTIES OUTPUT_NAME privateer )
 
-target_link_options(privateer_exec PRIVATE --preload-file data/linkage_torsions@/ -sDEMANGLE_SUPPORT=1 -sASSERTIONS=2 -fexceptions -sALLOW_MEMORY_GROWTH=1 --bind -sFORCE_FILESYSTEM=1 -sMODULARIZE=1 -sEXPORT_NAME=privateer_module -sEXPORTED_RUNTIME_METHODS=['FS'] -sMODULARIZE=1 -sEXPORT_ES6=1 )
+target_link_options(privateer_exec PRIVATE --preload-file data/linkage_torsions@/ -sDEMANGLE_SUPPORT=0 -sEXIT_RUNTIME=1 -sASSERTIONS=2 -fexceptions -sALLOW_MEMORY_GROWTH=1 --bind -sFORCE_FILESYSTEM=1 -sMODULARIZE=1 -sEXPORT_NAME=privateer_module -sEXPORTED_RUNTIME_METHODS=['FS'] -sMODULARIZE=1 -sEXPORT_ES6=1 )
 
 target_link_directories(privateer_exec
  PUBLIC 
@@ -176,6 +173,7 @@ ${PRIVATEER_SOURCE_DIR}/cpp/privateer-json.h
 ${PRIVATEER_SOURCE_DIR}/cpp/clipper-glyco.h
 ${PRIVATEER_SOURCE_DIR}/cpp/privateer-parallelism.h
 ${PRIVATEER_SOURCE_DIR}/cpp/privateer-cryo_em.h
+${PRIVATEER_SOURCE_DIR}/cpp/third-party/simdjson/simdjson.h
 )
 
 set_target_properties(privateer_exec PROPERTIES PUBLIC_HEADER "${privateer_HEADERS}")

build.sh

@@ -1,7 +1,7 @@
-source /Applications/ccp4-8.0/bin/ccp4.setup-sh 
-source ~/Development/privateer/emsdk/emsdk_env.sh
-# source /opt/xtal/ccp4-8.0/bin/ccp4.setup-sh 
-# source ~/dev/privateer_wasm/emsdk/emsdk_env.sh
+#source /Applications/ccp4-8.0/bin/ccp4.setup-sh
+#source ~/Development/privateer/emsdk/emsdk_env.sh
+ source /opt/xtal/ccp4-8.0/bin/ccp4.setup-sh
+ source ~/dev/privateer_wasm/emsdk/emsdk_env.sh
 
 emcmake cmake .
 emmake make -j

clipper/gemmi/CMakeLists.txt

@@ -1,15 +1,27 @@
 project(clipper-gemmi)
 
-add_library(clipper-gemmi STATIC 
-../../checkout/clipper/clipper/gemmi/clipper_gemmi.cpp)
+add_library(clipper-gemmi STATIC
+../../checkout/clipper/clipper/gemmi/clipper_gemmi.cpp
+../../checkout/clipper/clipper/gemmi/clipper_gemmi_model.cpp
+)
+#../../checkout/clipper/clipper/gemmi/clipper_gemmi_map.cpp
+
 
 target_include_directories(clipper-gemmi PRIVATE
   ../../checkout/clipper/clipper
   ../../checkout/clipper/
   ../../checkout/gemmi/include)
 
+target_link_directories(clipper-gemmi PRIVATE
+  ../../gemmi
+ )
+
+ target_link_libraries(clipper-gemmi PRIVATE gemmi_cpp)
+
 set(clipper-gemmi_HEADERS
 ${CMAKE_SOURCE_DIR}/checkout/clipper/clipper/gemmi/clipper_gemmi.h
+# ${CMAKE_SOURCE_DIR}/checkout/clipper/clipper/gemmi/clipper_gemmi_map.h
+${CMAKE_SOURCE_DIR}/checkout/clipper/clipper/gemmi/clipper_gemmi_model.h
 )
 
 target_compile_options(clipper-gemmi PUBLIC "-DFFTW_ENABLE_FLOAT")
@@ -18,4 +30,4 @@ set_target_properties(clipper-gemmi PROPERTIES PUBLIC_HEADER "${clipper-gemmi_HE
 install(TARGETS clipper-gemmi
 LIBRARY DESTINATION lib
 PUBLIC_HEADER DESTINATION include/clipper/gemmi
-)
+)

clipper/minimol/CMakeLists.txt

@@ -4,18 +4,29 @@ add_library(clipper-minimol STATIC
 ../../checkout/clipper/clipper/minimol/container_minimol.cpp
 ../../checkout/clipper/clipper/minimol/minimol.cpp
 ../../checkout/clipper/clipper/minimol/minimol_data.cpp
-../../checkout/clipper/clipper/minimol/minimol_io.cpp
+../../checkout/clipper/clipper/minimol/minimol_io_gemmi.cpp
+../../checkout/clipper/clipper/minimol/minimol_io_mmdb.cpp
 ../../checkout/clipper/clipper/minimol/minimol_seq.cpp
 ../../checkout/clipper/clipper/minimol/minimol_utils.cpp
 )
 
-target_include_directories(clipper-minimol PRIVATE ../../checkout/mmdb2/ ../../checkout/clipper ../../checkout/clipper/clipper ../../checkout/fftw-2.1.5/fftw ../../checkout/fftw-2.1.5/rfftw ../../checkout/gemmi/include ../../dependencies/gemmi/include/gemmi)
+target_include_directories(clipper-minimol PRIVATE
+ ${CMAKE_SOURCE_DIR}/install/include/
+ ${CMAKE_SOURCE_DIR}/install/include/gemmi
+ ../../checkout/mmdb2/ .
+ ./../checkout/clipper
+  ../../checkout/fftw-2.1.5/fftw
+  ../../checkout/fftw-2.1.5/rfftw
+    ../../checkout/gemmi/include
+
+  )
 
 set(clipper-minimol_HEADERS
 ${CMAKE_SOURCE_DIR}/checkout/clipper//clipper/minimol/minimol_data.h
 ${CMAKE_SOURCE_DIR}/checkout/clipper//clipper/minimol/minimol.h
 ${CMAKE_SOURCE_DIR}/checkout/clipper//clipper/minimol/container_minimol.h
-${CMAKE_SOURCE_DIR}/checkout/clipper//clipper/minimol/minimol_io.h
+${CMAKE_SOURCE_DIR}/checkout/clipper//clipper/minimol/minimol_io_gemmi.h
+${CMAKE_SOURCE_DIR}/checkout/clipper//clipper/minimol/minimol_io_mmdb.h
 ${CMAKE_SOURCE_DIR}/checkout/clipper//clipper/minimol/minimol_seq.h
 ${CMAKE_SOURCE_DIR}/checkout/clipper//clipper/minimol/minimol_utils.h
 ${CMAKE_SOURCE_DIR}/checkout/clipper//clipper/clipper-minimol.h
@@ -27,4 +38,4 @@ set_target_properties(clipper-minimol PROPERTIES PUBLIC_HEADER "${clipper-minimo
 install(TARGETS clipper-minimol
 LIBRARY DESTINATION lib
 PUBLIC_HEADER DESTINATION include/clipper/minimol
-)
+)

gemmi/CMakeLists.txt

@@ -0,0 +1,214 @@
+cmake_minimum_required(VERSION 3.13)
+
+project(gemmi LANGUAGES C CXX)
+
+set(CMAKE_CXX_STANDARD 11)
+message(STATUS "Compiling with C++ standard: ${CMAKE_CXX_STANDARD}")
+set(CMAKE_CXX_STANDARD_REQUIRED ON)
+
+set(gemmi_src ../checkout/gemmi)
+
+find_package(ZLIB)
+if (ZLIB_FOUND)
+  include_directories("${ZLIB_INCLUDE_DIR}")
+else()
+  message(STATUS "The build will use zlib code from third_party/zlib.")
+  include_directories("${gemmi_src}/third_party/zlib")
+endif()
+
+include_directories("${gemmi_src}/include"
+        "${gemmi_src}/third_party")
+
+
+file(GLOB CPP_FILES ${gemmi_src}/src/*.cpp)
+
+add_library(gemmi_cpp
+            ${CPP_FILES})
+
+#set_target_properties(gemmi_cpp PROPERTIES COMPILE_FLAGS "-fexceptions -pthread -s USE_ZLIB=1 -s USE_PTHREADS=1" ) ${gemmi_src}/src/gz.cpp
+
+file(GLOB HEADER_FILES ${gemmi_src}/include/gemmi/*.hpp)
+
+set(gemmi_HEADERS
+        ${HEADER_FILES}
+)
+
+set(gemmi_third_party-headers_HEADERS
+        ${gemmi_src}/include/gemmi/third_party/fast_float.h
+        ${gemmi_src}/include/gemmi/third_party/pocketfft_hdronly.h
+        ${gemmi_src}/include/gemmi/third_party/sajson.h
+        ${gemmi_src}/include/gemmi/third_party/tinydir.h
+)
+
+set(gemmi_third_party_tao-headers_HEADERS
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl.hpp
+)
+
+set(gemmi_third_party_tao_pegtl-headers_HEADERS
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/analyze.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/apply_mode.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/argv_input.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/ascii.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/buffer_input.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/config.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/cstream_input.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/eol.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/eol_pair.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/file_input.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/input_error.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/istream_input.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/memory_input.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/mmap_input.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/normal.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/nothing.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/parse.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/parse_error.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/position.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/read_input.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/rewind_mode.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/rules.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/string_input.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/tracking_mode.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/utf16.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/utf32.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/utf8.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/version.hpp
+)
+
+set(gemmi_third_party_tao_pegtl_analysis-headers_HEADERS
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/analysis/analyze_cycles.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/analysis/counted.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/analysis/generic.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/analysis/grammar_info.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/analysis/insert_guard.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/analysis/insert_rules.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/analysis/rule_info.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/analysis/rule_type.hpp
+)
+
+set(gemmi_third_party_tao_pegtl_internal-headers_HEADERS
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/action.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/action_input.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/alnum.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/alpha.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/any.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/apply.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/apply0.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/apply0_single.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/apply_single.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/at.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/bof.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/bol.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/bump_help.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/bump_impl.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/bytes.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/control.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/cr_crlf_eol.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/cr_eol.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/crlf_eol.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/cstream_reader.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/cstring_reader.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/demangle.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/demangle_cxxabi.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/demangle_nop.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/demangle_sanitise.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/disable.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/discard.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/dusel_mode.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/duseltronik.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/enable.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/endian.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/endian_gcc.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/endian_win.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/eof.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/eol.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/eolf.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/file_mapper.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/file_opener.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/file_reader.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/has_apply.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/has_apply0.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/identifier.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/if_apply.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/if_must.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/if_must_else.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/if_then_else.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/input_pair.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/integer_sequence.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/istream_reader.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/istring.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/iterator.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/lf_crlf_eol.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/lf_eol.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/list.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/list_must.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/list_tail.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/list_tail_pad.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/marker.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/minus.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/must.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/not_at.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/one.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/opt.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/pad.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/pad_opt.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/peek_char.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/peek_utf16.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/peek_utf32.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/peek_utf8.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/pegtl_string.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/plus.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/raise.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/range.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/ranges.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/rep.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/rep_min.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/rep_min_max.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/rep_opt.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/require.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/result_on_found.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/rule_conjunction.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/rules.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/seq.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/skip_control.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/sor.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/star.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/star_must.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/state.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/string.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/trivial.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/try_catch_type.hpp
+        ${gemmi_src}/include/gemmi/third_party/tao/pegtl/internal/until.hpp
+)
+
+set_target_properties(gemmi_cpp PROPERTIES PUBLIC_HEADER "${gemmi_HEADERS}")
+
+install(TARGETS gemmi_cpp
+        LIBRARY DESTINATION lib
+        PUBLIC_HEADER DESTINATION include/gemmi
+)
+
+install(FILES
+        ${gemmi_third_party-headers_HEADERS}
+        DESTINATION include/gemmi/third_party
+)
+
+install(FILES
+        ${gemmi_third_party_tao-headers_HEADERS}
+        DESTINATION include/gemmi/third_party/tao
+)
+
+install(FILES
+        ${gemmi_third_party_tao_pegtl-headers_HEADERS}
+        DESTINATION include/gemmi/third_party/tao/pegtl
+)
+
+install(FILES
+        ${gemmi_third_party_tao_pegtl_analysis-headers_HEADERS}
+        DESTINATION include/gemmi/third_party/tao/pegtl/analysis
+)
+
+install(FILES
+        ${gemmi_third_party_tao_pegtl_internal-headers_HEADERS}
+        DESTINATION include/gemmi/third_party/tao/pegtl/internal
+)