Add smudge button in ea_checkstructures to open smudge module

ea_checkstructures.m

@@ -22,10 +22,10 @@
 
 % Edit the above text to modify the response to help ea_checkstructures
 
-% Last Modified by GUIDE v2.5 21-May-2019 11:39:05
+% Last Modified by GUIDE v2.5 04-Feb-2020 14:57:52
 
 % Begin initialization code - DO NOT EDIT
-gui_Singleton = 0;
+gui_Singleton = 1;
 gui_State = struct('gui_Name',       mfilename, ...
     'gui_Singleton',  gui_Singleton, ...
     'gui_OpeningFcn', @ea_checkstructures_OpeningFcn, ...
@@ -852,3 +852,25 @@ function smoothgzip(pathn,filen)
 movefile(fullfile(pathn,['s',filen]),fullfile(pathn,filen));
 gzip(fullfile(pathn,filen));
 delete(fullfile(pathn,filen));
+
+
+% --- Executes on button press in pushbutton6.
+function pushbutton6_Callback(hObject, eventdata, handles)
+% hObject    handle to pushbutton6 (see GCBO)
+% eventdata  reserved - to be defined in a future version of MATLAB
+% handles    structure with handles and user data (see GUIDATA)
+
+options = getappdata(handles.checkstructures,'options');
+subject_path = fullfile(options.root,options.patientname);
+% check for new outputs
+if ~isfile(fullfile(subject_path,'glanatComposite.nii.gz'))
+    errordlg('Didn''t found .nii.gz composite transform. Re-run subject to generate it.');
+    return
+end
+slicer_path = ea_runslicer(options,5);
+module_script = fullfile(ea_getearoot,'ext_libs','SmudgeModule','SmudgeModule.py');
+command = [slicer_path ' --no-main-window --python-script ' module_script ' ' subject_path ' ' ea_getearoot];
+system(command);
+
+
+