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Use gaussian_profile formula in generic_ion_el_heat_source. #2699

Use gaussian_profile formula in generic_ion_el_heat_source.

Use gaussian_profile formula in generic_ion_el_heat_source. #2699

Workflow file for this run

name: Unittests
# Allow to trigger the workflow manually (e.g. when deps changes)
on:
workflow_dispatch:
pull_request:
branches:
- main
# Do not trigger tests for documentation or markdown docs.
paths-ignore:
- 'docs/**'
- '*.md'
types: [opened, synchronize, reopened]
push:
# Do not trigger tests for documentation or markdown docs.
paths-ignore:
- 'docs/**'
- '*.md'
schedule:
# Trigger tests every day at 02:00 UTC.
- cron: '0 2 * * *'
# Concurrency config borrowed from tensorflow_datasets.
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}-${{ github.ref != 'refs/heads/master' || github.run_number }}
# Cancel only PR intermediate builds
cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
# Set the correct env variables for all the unit tests
env:
TORAX_ERRORS_ENABLED: 1
PYTEST_NUM_SHARDS: 8 # Controls tests sharding enabled by `pytest-shard`
jobs:
shards-job:
name: Generate shards
runs-on: ubuntu-latest
steps:
- name: Create variables
id: create-vars
run: |
echo "num-shards=$(jq -n -c '[${{ env.PYTEST_NUM_SHARDS }}]')" >> $GITHUB_OUTPUT
echo "shard-ids=$(jq -n -c '[range(1;${{ env.PYTEST_NUM_SHARDS }}+1)]')" >> $GITHUB_OUTPUT
outputs:
num-shards: ${{ steps.create-vars.outputs.num-shards }}
shard-ids: ${{ steps.create-vars.outputs.shard-ids }}
pytest-job:
needs: shards-job
name: '[${{ matrix.os-version }}][Python ${{ matrix.python-version }}][${{ matrix.shard-id }}/${{ matrix.num-shards }}] Core TORAX tests'
runs-on: ${{ matrix.os-version }}
timeout-minutes: 30
strategy:
# Do not cancel in-progress jobs if any matrix job fails.
fail-fast: false
matrix:
# Can't reference env variables in matrix
num-shards: ${{ fromJson(needs.shards-job.outputs.num-shards) }}
shard-id: ${{ fromJson(needs.shards-job.outputs.shard-ids) }}
python-version: ['3.10']
os-version: [ubuntu-latest]
steps:
- uses: actions/checkout@v4
# Install deps
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- run: git clone https://gitlab.com/qualikiz-group/qlknn-hyper.git
- run: echo "TORAX_QLKNN_MODEL_PATH=$PWD/qlknn-hyper" >> "$GITHUB_ENV"
- run: pip --version
- run: pip install -e .[dev]
- run: pip freeze
# Run tests (in parallel)
- name: Run core tests
run: |
pytest \
-vv -n auto \
--shard-id=$((${{ matrix.shard-id }} - 1)) --num-shards=${{ env.PYTEST_NUM_SHARDS }}