introduce build_geometry entry point as common entrypoint for EQ codes #202
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| name: Unittests | |
| # Allow to trigger the workflow manually (e.g. when deps changes) | |
| on: [push, workflow_dispatch] | |
| # Concurrency config borrowed from tensorflow_datasets. | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ github.ref != 'refs/heads/master' || github.run_number }} | |
| # Cancel only PR intermediate builds | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| # Set the correct env variables for all the unit tests | |
| env: | |
| TORAX_ERRORS_ENABLED: 1 | |
| PYTEST_NUM_SHARDS: 4 # Controls tests sharding enabled by `pytest-shard` | |
| jobs: | |
| shards-job: | |
| name: Generate shards | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Create variables | |
| id: create-vars | |
| run: | | |
| echo "num-shards=$(jq -n -c '[${{ env.PYTEST_NUM_SHARDS }}]')" >> $GITHUB_OUTPUT | |
| echo "shard-ids=$(jq -n -c '[range(1;${{ env.PYTEST_NUM_SHARDS }}+1)]')" >> $GITHUB_OUTPUT | |
| outputs: | |
| num-shards: ${{ steps.create-vars.outputs.num-shards }} | |
| shard-ids: ${{ steps.create-vars.outputs.shard-ids }} | |
| pytest-job: | |
| needs: shards-job | |
| name: '[${{ matrix.os-version }}][Python ${{ matrix.python-version }}][${{ matrix.shard-id }}/${{ matrix.num-shards }}] Core TORAX tests' | |
| runs-on: ${{ matrix.os-version }} | |
| timeout-minutes: 30 | |
| strategy: | |
| # Do not cancel in-progress jobs if any matrix job fails. | |
| fail-fast: false | |
| matrix: | |
| # Can't reference env variables in matrix | |
| num-shards: ${{ fromJson(needs.shards-job.outputs.num-shards) }} | |
| shard-id: ${{ fromJson(needs.shards-job.outputs.shard-ids) }} | |
| python-version: ['3.10'] | |
| os-version: [ubuntu-latest] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # Install deps | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - run: git clone https://gitlab.com/qualikiz-group/qlknn-hyper.git | |
| - run: echo "TORAX_QLKNN_MODEL_PATH=$PWD/qlknn-hyper" >> "$GITHUB_ENV" | |
| - run: pip --version | |
| - run: pip install -e .[dev] | |
| # TODO(b/323504363): [dev] should install these | |
| - run: pip install pytest pytest-xdist pytest-shard | |
| - run: pip freeze | |
| # Run tests (in parallel) | |
| # TODO(b/323504363): tests should be discovered automatically | |
| - name: Run core tests | |
| run: | | |
| pytest \ | |
| torax/fvm/tests/fvm.py \ | |
| torax/sources/tests/bootstrap_current_source.py \ | |
| torax/sources/tests/current_density_sources.py \ | |
| torax/sources/tests/electron_density_sources.py \ | |
| torax/sources/tests/external_current_source.py \ | |
| torax/sources/tests/fusion_heat_source.py \ | |
| torax/sources/tests/generic_ion_el_heat_source.py \ | |
| torax/sources/tests/ion_el_heat_sources.py \ | |
| torax/sources/tests/qei_source.py \ | |
| torax/sources/tests/source_config.py \ | |
| torax/sources/tests/source_models.py \ | |
| torax/sources/tests/source.py \ | |
| torax/spectators/tests/plotting.py \ | |
| torax/spectators/tests/spectator.py \ | |
| torax/tests/boundary_conditions.py \ | |
| torax/tests/config_slice.py \ | |
| torax/tests/config.py \ | |
| torax/tests/geometry.py \ | |
| torax/tests/interpolated_param.py \ | |
| torax/tests/jax_utils.py \ | |
| torax/tests/math_utils.py \ | |
| torax/tests/opt.py \ | |
| torax/tests/physics.py \ | |
| torax/tests/sim_time_dependence.py \ | |
| torax/tests/state.py \ | |
| torax/transport_model/tests/qlknn_wrapper.py \ | |
| torax/transport_model/tests/transport_model.py \ | |
| -vv -n auto \ | |
| --shard-id=$((${{ matrix.shard-id }} - 1)) --num-shards=${{ env.PYTEST_NUM_SHARDS }} | |
| # # TODO(b/323504363): fix UnparsedFlagAccessError and run under pytest | |
| # - name: "Run torax/tests/sim_custom_sources.py" | |
| # run: python torax/tests/sim_custom_sources.py | |
| # # TODO(b/323504363): fix UnparsedFlagAccessError and run under pytest | |
| # - name: "Run torax/sources/tests/formulas.py" | |
| # run: python torax/sources/tests/formulas.py | |
| # # TODO(b/323504363): fix UnparsedFlagAccessError, pass env variable, and run under pytest | |
| # - name: "Run torax/tests/sim_no_compile.py" | |
| # run: TORAX_COMPILATION_ENABLED=False python torax/tests/sim_no_compile.py | |
| # # TODO(b/323504363): fix UnparsedFlagAccessError, parallelize, and run under pytest | |
| # - name: "Run torax/tests/sim.py" | |
| # run: python torax/tests/sim.py |