Remove the --run_only_passes and replace all uses with appropriate …

…`--passes` flags

In almost all cases what one wants when using the `--run_only_passes` flag was to run a single pass. Using the `--passes` flag is much clearer. In a small number of cases an actual pipeline is required and in that case the explicit `--passes` pipeline is much nicer and easier to reason about since it doesn't have the implicit embeeding of the standard pipeline.

PiperOrigin-RevId: 596700128

transpiler/fhe_xls.bzl

@@ -65,7 +65,7 @@ def _optimize_and_booleanify_repeatedly(ctx, stem, ir_file, entry):
     # inlining pass, as the booleanifier expects a single function.
     if ctx.attr.num_opt_passes == 0:
         suffix += ".opt"
-        results.append(optimize_ir(ctx, stem, results[-1], suffix + ".ir", entry, ["--run_only_passes=inlining"]))
+        results.append(optimize_ir(ctx, stem, results[-1], suffix + ".ir", entry, ["--passes=inlining"]))
         suffix += ".bool"
         results.append(_booleanify_ir(ctx, stem, results[-1], suffix + ".ir", entry))
     else: