Change version to 0.5.4, update docs and README.

PiperOrigin-RevId: 345256812
google · Dec 10, 2020 · 855d162 · 855d162
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Showing 4 changed files with 16 additions and 4 deletions.
diff --git a/README.md b/README.md
@@ -73,7 +73,7 @@ Note that install.sh extensively depends on apt-get, so it is unlikely
 to run without extensive modifications on non-Debian-based systems.
 
 Nucleus depends on TensorFlow.  By default, install.sh will
-install a CPU-only version of a stable TensorFlow release (currently 1.11).
+install a CPU-only version of a stable TensorFlow release (currently 2.1).
 If that isn't what you want, there are several other options that
 can be enabled with a simple edit to ``install.sh``.
 
@@ -87,9 +87,13 @@ bazel test -c opt $BAZEL_FLAGS nucleus/...
 
 ## Version
 
-This is Nucleus 0.5.3.  Nucleus follows [semantic
+This is Nucleus 0.5.4. Nucleus follows [semantic
 versioning](https://semver.org/).
 
+New in 0.5.4:
+* Upgrade to protobuf 3.8.0 to support TensorFlow 2.1.0.
+* Add explicit .close() method to TFRecordWriter.
+
 New in 0.5.3:
 
 * Fixes memory leaks in message_module.cc.

diff --git a/docs/source/nucleus/io/genomics_writer.md b/docs/source/nucleus/io/genomics_writer.md
@@ -119,6 +119,14 @@ Raises:
   IOError:  if there was any problem opening output_path for writing.
 ```
 
+<a name="close"></a>
+
+##### `close(self)`
+
+```
+Explicitly closes writer.
+```
+
 <a name="write"></a>
 ##### `write(self, proto)`
 ```

diff --git a/nucleus/pip_package/build_pip_package.sh b/nucleus/pip_package/build_pip_package.sh
@@ -28,7 +28,7 @@ set -x
 
 # When changing NUCLEUS_VERSION, be sure to also change it in
 # egg_files/PKG-INFO.
-NUCLEUS_VERSION="0.5.3"
+NUCLEUS_VERSION="0.5.4"
 PACKAGE_NAME="google_nucleus-${NUCLEUS_VERSION}"
 PYTHON_VERSION="3.5"
 

diff --git a/nucleus/pip_package/egg_files/PKG-INFO b/nucleus/pip_package/egg_files/PKG-INFO
@@ -1,6 +1,6 @@
 Metadata-Version: 1.1
 Name: google-nucleus
-Version: 0.5.3
+Version: 0.5.4
 Summary: A library for reading and writing genomics data.
 Home-page: https://github.com/google/nucleus
 Author: The Genomics team in Google Brain