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1. kgbio kgbio Public

   My one-stop-shop for bioinformatics utilities that I have written over the years.

   Python

2. nextflow-io/nextflow nextflow-io/nextflow Public

   A DSL for data-driven computational pipelines

   Groovy 2.8k 629

3. deepvariant deepvariant Public

   Forked from google/deepvariant

   DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

   Python

4. multi_padlock_design multi_padlock_design Public

   Forked from Moldia/multi_padlock_design

   Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling

   Python

5. pySCENIC pySCENIC Public

   Forked from aertslab/pySCENIC

   pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

   Python

6. igvteam/igv-notebook igvteam/igv-notebook Public

   Module for embedding igv.js in an IPython notebook

   JavaScript 66 14