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gozsari/README.md

👋 Hello, I'm Gökhan Özsari

🚀 Data Engineer @ SciLifeLab Data Centre | 👨‍🔬 Research Engineer @ Chalmers University of Technology
🎓 PhD Candidate in Computer Science, METU | 💡 Passionate about Data Science, AI, and Open Science


🧠 About Me

I’m a Research Engineer and Data Engineer with an academic background and over 10 years of experience across academia and research infrastructure. I currently contribute to large-scale life science data projects at Chalmers e-Commons and SciLifeLab DC.

My personal interests include:

  • Machine Learning & Deep Learning (especially for bioinformatics)
    • Graph Neural Networks
    • Explainability
    • Transfer Learning
  • MLOps and scalable data pipelines
  • Open Science and FAIR data principles
  • Research tooling and infrastructure
  • Education and training in data science and machine learning

⚙️ Skills & Technologies

Category Tools & Technologies
Programming Languages
Version Control and CI/CD
Data Science & ML/DL
Explainability Tools
MLOps & Experiment Tracking
Web & API Development
Containers & Automation
Databases
Performance Testing
Active Learning Framework
Identity & Access Management

📂 Featured Repositories

📚 Tutorials

Here are some of my tutorials prepared to help you get started with various tools and technologies.


📈 GitHub Stats

Gökhan Özsari's GitHub stats Top Langs


📫 Let's Connect


Thanks for stopping by! Feel free to explore my repos or reach out for collaboration.

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  1. SLPred SLPred Public

    a tool for subcellular localization prediction of human proteins

    Python 3

  2. Awesome-GNN-based-drug-discovery Awesome-GNN-based-drug-discovery Public

    This is a curated list of research papers, resources and tools related to using Graph Neural Networks (GNNs) for drug discovery.

    48 9

  3. ProtFeat ProtFeat Public

    ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.

    Python 20 2

  4. Single-Cell-Data-Analysis Single-Cell-Data-Analysis Public

    Notes and studies about single-cell RNA-Seq analysis

    Python 8 4

  5. SPMap_Tool SPMap_Tool Public

    This repo is to extract protein features using SPMap tool

    Python 2

  6. ML-OneDay-Course ML-OneDay-Course Public

    This is a one-day machine learning introductory course for beginners

    Jupyter Notebook 5