AlCatt91 published a site update

graphcore-research · May 24, 2024 · 6d88f72 · 6d88f72
1 parent fe05e06
commit 6d88f72
Show file tree

Hide file tree

Showing 6 changed files with 27 additions and 27 deletions.
diff --git a/_sources/notebooks/ogb_biokg_demo.ipynb.txt b/_sources/notebooks/ogb_biokg_demo.ipynb.txt
@@ -37,7 +37,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -47,7 +47,7 @@
     "import seaborn as sns\n",
     "\n",
     "import ogb.linkproppred\n",
-    "from kg_topology_toolbox import TopologyToolbox  # edit name of class after merging\n",
+    "from kg_topology_toolbox import KGTopologyToolbox\n",
     "\n",
     "dataset_directory = \"../../../data/ogb-biokg/\""
    ]
@@ -63,7 +63,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 3,
    "metadata": {},
    "outputs": [
     {
@@ -181,7 +181,7 @@
        "[5088434 rows x 3 columns]"
       ]
      },
-     "execution_count": 2,
+     "execution_count": 3,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -207,11 +207,11 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [],
    "source": [
-    "kgtt = TopologyToolbox()  # edit name of class after merging"
+    "kgtt = KGTopologyToolbox()"
    ]
   },
   {
@@ -231,7 +231,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
     {
@@ -385,7 +385,7 @@
        "[45085 rows x 6 columns]"
       ]
      },
-     "execution_count": 4,
+     "execution_count": 5,
      "metadata": {},
      "output_type": "execute_result"
     }

diff --git a/_sources/user_guide.rst.txt b/_sources/user_guide.rst.txt
@@ -4,7 +4,7 @@ User guide
 Installation and usage
 ------------------------
 
-1. Pip install :code:`kg-topology-toolbox``:
+1. Pip install :code:`kg-topology-toolbox`:
 
 .. code-block::
 

diff --git a/notebooks/ogb_biokg_demo.html b/notebooks/ogb_biokg_demo.html
@@ -119,7 +119,7 @@ <h2>Dependencies<a class="headerlink" href="#Dependencies" title="Link to this h
 </pre></div></div>
 </div>
 <div class="nbinput nblast docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[1]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[2]:
 </pre></div>
 </div>
 <div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre><span></span>import numpy as np
@@ -128,7 +128,7 @@ <h2>Dependencies<a class="headerlink" href="#Dependencies" title="Link to this h
 import seaborn as sns
 
 import ogb.linkproppred
-from kg_topology_toolbox import TopologyToolbox  # edit name of class after merging
+from kg_topology_toolbox import KGTopologyToolbox
 
 dataset_directory = &quot;../../../data/ogb-biokg/&quot;
 </pre></div>
@@ -139,7 +139,7 @@ <h2>Dependencies<a class="headerlink" href="#Dependencies" title="Link to this h
 <h2>Data preparation<a class="headerlink" href="#Data-preparation" title="Link to this heading"></a></h2>
 <p>We load the OGBL-BioKG dataset using the <code class="docutils literal notranslate"><span class="pre">ogb.linkproppred.LinkPropPredDataset</span></code> class and store all (h, r, t) triples in a <code class="docutils literal notranslate"><span class="pre">pandas</span></code> DataFrame.</p>
 <div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[2]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[3]:
 </pre></div>
 </div>
 <div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre><span></span>dataset = ogb.linkproppred.LinkPropPredDataset(
@@ -155,7 +155,7 @@ <h2>Data preparation<a class="headerlink" href="#Data-preparation" title="Link t
 </div>
 </div>
 <div class="nboutput nblast docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[2]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[3]:
 </pre></div>
 </div>
 <div class="output_area rendered_html docutils container">
@@ -256,10 +256,10 @@ <h2>Data preparation<a class="headerlink" href="#Data-preparation" title="Link t
 </div>
 <p>Based on this representation of the knowledge graph, we can proceed to compute its topological properties using the <code class="docutils literal notranslate"><span class="pre">KGTopologyToolbox</span></code> class.</p>
 <div class="nbinput nblast docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[3]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[4]:
 </pre></div>
 </div>
-<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre><span></span>kgtt = TopologyToolbox()  # edit name of class after merging
+<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre><span></span>kgtt = KGTopologyToolbox()
 </pre></div>
 </div>
 </div>
@@ -275,7 +275,7 @@ <h2>Node-level analysis<a class="headerlink" href="#Node-level-analysis" title="
 <li><p><code class="docutils literal notranslate"><span class="pre">n_loops</span></code> is the number of loop edges around the node.</p></li>
 </ul>
 <div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[4]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[5]:
 </pre></div>
 </div>
 <div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre><span></span>node_ds = kgtt.node_degree_summary(biokg_df)
@@ -284,7 +284,7 @@ <h2>Node-level analysis<a class="headerlink" href="#Node-level-analysis" title="
 </div>
 </div>
 <div class="nboutput nblast docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[4]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[5]:
 </pre></div>
 </div>
 <div class="output_area rendered_html docutils container">

diff --git a/notebooks/ogb_biokg_demo.ipynb b/notebooks/ogb_biokg_demo.ipynb
@@ -37,7 +37,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -47,7 +47,7 @@
     "import seaborn as sns\n",
     "\n",
     "import ogb.linkproppred\n",
-    "from kg_topology_toolbox import TopologyToolbox  # edit name of class after merging\n",
+    "from kg_topology_toolbox import KGTopologyToolbox\n",
     "\n",
     "dataset_directory = \"../../../data/ogb-biokg/\""
    ]
@@ -63,7 +63,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 3,
    "metadata": {},
    "outputs": [
     {
@@ -181,7 +181,7 @@
        "[5088434 rows x 3 columns]"
       ]
      },
-     "execution_count": 2,
+     "execution_count": 3,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -207,11 +207,11 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [],
    "source": [
-    "kgtt = TopologyToolbox()  # edit name of class after merging"
+    "kgtt = KGTopologyToolbox()"
    ]
   },
   {
@@ -231,7 +231,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
     {
@@ -385,7 +385,7 @@
        "[45085 rows x 6 columns]"
       ]
      },
-     "execution_count": 4,
+     "execution_count": 5,
      "metadata": {},
      "output_type": "execute_result"
     }