Keeping the pipeline up to date

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Grey Christoforo edited this page Jul 7, 2016 · 6 revisions

Note that this requires having read access to the private repo https://github.com/kundajelab/pipelines

GIT_SSH_COMMAND='ssh -i ~/.ssh/id_gac_rsa.pub' git clone [email protected]:greysAcademicCode/docker-pipelines.git
cd docker-pipelines
# possibly `git checkout testing` here
GIT_SSH_COMMAND='ssh -i ~/.ssh/id_gac_rsa.pub' git submodule update --recursive --init --remote
git add pipelines
git commit -m "upstream pipeline version bump"
GIT_SSH_COMMAND='ssh -i ~/.ssh/id_gac_rsa.pub' git push

To set the pipeline to the checkout it should be:

cd docker-pipelines
git submodule init
GIT_SSH_COMMAND='ssh -i ~/.ssh/id_gac_rsa.pub' git submodule update --recursive --checkout