display trunacated source links

griffithlab · Mar 10, 2016 · de53a07 · de53a07
1 parent 6d22da6
commit de53a07
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Showing 7 changed files with 780 additions and 4 deletions.
diff --git a/aml_hotspot.tsv b/aml_hotspot.tsv
diff --git a/app/presenters/variant_datatable_row_presenter.rb b/app/presenters/variant_datatable_row_presenter.rb
@@ -30,9 +30,21 @@ def disease_list
   end
 
   def source_list
-    disease_sources
+    links = disease_sources
       .sort_by { |s| s.pubmed_id }
+      .take(number_of_links_to_show)
       .map { |s| source_link(s) }.join(', ')
+
+      remaining = disease_sources.count - number_of_links_to_show
+
+      if remaining > 0
+        links + ", and #{remaining} more."
+      else
+        links
+      end
   end
 
+  def number_of_links_to_show
+    5
+  end
 end
diff --git a/app/views/static/news.html.haml b/app/views/static/news.html.haml
@@ -8,7 +8,7 @@
           %br
           .news-items
             .news-item
-              %p.lead 2/22/16
+              %p.lead 3/10/16
               %p Database update. Automatic importer implemented to automatically import relevant variants from #{link_to 'CIViC', 'https://civic.genome.wustl.edu'}, a database of clinical interpretations of variants in cancer.
             .news-item
               %p.lead 1/15/16

diff --git a/app/views/variants/index.html.haml b/app/views/variants/index.html.haml
@@ -44,7 +44,7 @@
                   %th Amino Acid
                   %th Mutation Type
                   %th.desktop Diseases
-                  %th.desktop PubMed IDs
+                  %th.desktop Citations
               %tbody
 
 
diff --git a/config/application.rb b/config/application.rb
@@ -16,7 +16,7 @@ class Application < Rails::Application
     config.autoload_paths += %W(#{config.root}/lib)
     config.assets.initialize_on_precompile = false
 
-    config.data_dump_version = 10
+    config.data_dump_version = 11
     config.data_dump_path = File.join(Rails.root, 'db', 'data.sql')
 
     # Set Time.zone default to the specified zone and make Active Record auto-convert to this zone.

diff --git a/docm-8-15-14.tsv b/docm-8-15-14.tsv
diff --git a/known_issues b/known_issues
@@ -0,0 +1,4 @@
+chr column sort
+red code blocks on api docs
+vcf mime type after download?
+rounded vs square corners on page frame