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87 Open 561 Closed
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Issues list

Console warnings/errors bug report / hotfix PR pVACview
#1199 opened Feb 7, 2025 by susannasiebert
Neoantigens with RNA expression = 0 tiered as Pass
#1197 opened Feb 6, 2025 by biounix
4
cant run pvacsplice on non-human species (when using pvactools docker image 5.0.1 and 5.1.0)
#1196 opened Feb 5, 2025 by mhoang22
1
Incorrect Mutation Position value bug report / hotfix PR
#1195 opened Feb 5, 2025 by arosenfeld
1
integrate pVACcompare to pVACtools
#1194 opened Feb 4, 2025 by mhoang22
1
package the peptide order form assist scripts (create report and color peptide) into a tool
#1193 opened Feb 4, 2025 by mhoang22
1
Add support for calculating percentile ranks on a consistent set of reference peptides
#1192 opened Feb 4, 2025 by malachig
DNP variants result in a mutation position of 0 bug report / hotfix PR
#1191 opened Feb 4, 2025 by malachig
@susannasiebert
Overwrite help text for pvacvector run binding threshold related arguments pVACvector
#1190 opened Feb 4, 2025 by susannasiebert 5.2.0
Add new aggregate report tiers "ProbAA" and "RefMatch" aggregate report pVACview
#1188 opened Jan 31, 2025 by susannasiebert 5.2.0
4
Fix incorrect pVACview header tooltips bug report / hotfix PR pVACview
#1187 opened Jan 31, 2025 by susannasiebert 5.1.1
1
@ldhtnp
Investigate TLStab (pMHC stability predictor) , TLImm (immunogenicity predictor)
#1183 opened Jan 28, 2025 by mhoang22
Reword filtering parameters to make distinction of usage for hard-filtering and tiering/prioritizing clear.
#1182 opened Jan 28, 2025 by susannasiebert 5.2.0
Investigate mouse_anchor readTable warnings pVACview
#1176 opened Jan 7, 2025 by malachig 5.2.0
@ldhtnp
Create documentation for the download_cwls/wdls commands documentation
#1175 opened Jan 7, 2025 by susannasiebert 5.2.0
Consider HLApollo for integration grant
#1172 opened Jan 6, 2025 by susannasiebert
Error: No command specified bug report / hotfix PR
#1158 opened Nov 19, 2024 by Geneece
6
Allow passing candidates to be based on binding OR percentile cutoff.
#1142 opened Sep 9, 2024 by malachig 5.2.0
1
2
Plans for adding NetTCR-2.0?
#1141 opened Sep 7, 2024 by lukaas33
1
Update pVACview documentation (vignette) and pVACview Tutorials page to mention anchor weights and anchor distribution tables documentation
#1140 opened Sep 5, 2024 by susannasiebert 5.2.0
1
pVACseq: Discrepancy between {sample_id}.all_epitopes.tsv and {sample_id}.fasta ? bug report / hotfix PR
#1118 opened Jun 26, 2024 by yiolino
8
Potential improvements to the pVACview NeoFox module pVACview
#1098 opened Apr 30, 2024 by susannasiebert
4 of 13 tasks
Consider integration of MixMHCPred2
#1093 opened Apr 15, 2024 by malachig
3
Output a visual representation of the graph after all spacers have been tested pVACvector
#1089 opened Apr 5, 2024 by susannasiebert 5.2.0
1
QUESTION: How to integrate netchop results to aditionnally filter possible peptides
#1064 opened Feb 19, 2024 by PierreLaplante
ProTip! Exclude everything labeled bug with -label:bug.