flip comparison for DESeq2

griffithlab · Apr 24, 2024 · 4a3a342 · 4a3a342
1 parent f4dfe8e
commit 4a3a342
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/_posts/0003-03-03-Differential_Expression-DESeq2.md b/_posts/0003-03-03-Differential_Expression-DESeq2.md
@@ -102,7 +102,7 @@ htseqCounts <- htseqCounts[which(rowSums(htseqCounts >= 10) >=1),]
 
 # construct mapping of meta data
 metaData <- data.frame('Condition'=c('UHR', 'UHR', 'UHR', 'HBR', 'HBR', 'HBR'))
-metaData$Condition <- factor(metaData$Condition, levels=c('UHR', 'HBR'))
+metaData$Condition <- factor(metaData$Condition, levels=c('HBR', 'UHR'))
 rownames(metaData) <- colnames(htseqCounts)
 
 # check that htseq count cols match meta data rows