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Add logging filters, update config namespaces #3544

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Run time

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Job	Run time
coverage (3.12)	7m 34s
lint (3.12)	2m 55s
format (3.12)	3m 6s
spell-check (3.12)	1m 20s
type-check (3.12)	1m 46s
	16m 41s