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216 followers · 207 following
  • Boehringer Ingelheim
  • Biberach, DE
  • 23:21 (UTC +01:00)

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Achievement: Pair Extraordinairex4Achievement: QuickdrawAchievement: YOLOAchievement: Galaxy BrainAchievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex4Achievement: QuickdrawAchievement: YOLOAchievement: Galaxy BrainAchievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Organizations

@conda-forge @bioconda @jupyterlab @nf-core @icbi-lab

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grst/README.md

Gregor Sturm

Publications (Google Scholar) | GPG Key | Bluesky | Linkedin

I am a Research Software Engineer and Bioinformatics Scientist focusing on Immuno-Oncology. I work as a Clinical Bioinformatics Scientist at Boehringer Ingelheim. Before that, I did my PhD at icbi-lab. I am a core developer at scverse maintaining scirpy and some infrastructure packages. I am an active contributor to the nf-core community. In my free time, I love being outdoors, in particular orienteering, mountain biking and ski mountaineering.

Blog

Here are some articles I wrote:

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  1. scverse/scirpy scverse/scirpy Public

    A scanpy extension to analyse single-cell TCR and BCR data.

    Python 222 36

  2. omnideconv/immunedeconv omnideconv/immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    R 472 101

  3. nf-core/scrnaseq nf-core/scrnaseq Public

    A single-cell RNAseq pipeline for 10X genomics data

    Nextflow 220 176

  4. rstudio-server-conda rstudio-server-conda Public

    Run Rstudio Server in a conda environment

    Shell 238 50

  5. icbi-lab/infercnvpy icbi-lab/infercnvpy Public

    Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

    Python 140 27

  6. containerize-conda containerize-conda Public

    Turn an existing conda environment into a Singularity container

    Python 79 16