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pyproject.toml
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pyproject.toml
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[build-system]
build-backend = "hatchling.build"
requires = ["hatchling"]
[project]
name = "spatialdata-plot"
version = "0.0.1"
description = "Static plotting for spatialdata."
readme = "README.md"
requires-python = ">=3.9"
license = {file = "LICENSE"}
authors = [
{name = "scverse"},
]
maintainers = [
{name = "scverse", email = "[email protected]"},
]
urls.Documentation = "https://spatialdata-plot.readthedocs.io/"
urls.Source = "https://github.com/scverse/spatialdata-plot"
urls.Home-page = "https://github.com/scverse/spatialdata-plot"
dependencies = [
"spatialdata@git+https://github.com/scverse/spatialdata",
"matplotlib",
"scikit-learn",
"scanpy",
"matplotlib_scalebar"
]
[project.optional-dependencies]
dev = [
# dev version generation
"bump2version",
]
doc = [
"sphinx>=4.5",
"sphinx-book-theme>=0.3.3",
"myst-nb",
"sphinxcontrib-bibtex>=1.0.0",
"sphinx-autodoc-typehints",
# For notebooks
"ipython>=8.6.0",
"sphinx-copybutton",
]
test = [
"pytest",
"pytest-cov",
]
[tool.coverage.run]
source = ["spatialdata_plot"]
omit = [
"**/test_*.py",
]
[tool.pytest.ini_options]
testpaths = ["tests"]
xfail_strict = true
addopts = [
# "-Werror", # if 3rd party libs raise DeprecationWarnings, just use filterwarnings below
"--import-mode=importlib", # allow using test files with same name
]
# info on how to use this https://stackoverflow.com/questions/57925071/how-do-i-avoid-getting-deprecationwarning-from-inside-dependencies-with-pytest
filterwarnings = [
# "ignore:.*U.*mode is deprecated:DeprecationWarning",
]
[tool.isort]
include_trailing_comma = true
multi_line_output = 3
profile = "black"
skip_glob = ["docs/*"]
[tool.black]
line-length = 120
target-version = ['py39']
include = '\.pyi?$'
exclude = '''
(
/(
\.eggs
| \.git
| \.hg
| \.mypy_cache
| \.tox
| \.venv
| _build
| buck-out
| build
| dist
)/
)
'''
[tool.jupytext]
formats = "ipynb,md"
[tool.hatch.metadata]
allow-direct-references = true