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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,30 +1,30 @@ | ||
| sample_id,shortread_1,shortread_2,reference,reference_id,report_group,color_by,date_isolated,date_received,year,host,cv_key,nursery | ||
| 22-299,test/data/reads/22-299_R1.fastq.gz,test/data/reads/22-299_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/2/22,3/29/22,2022,Pelargonium x hortorum,CV-1,MD | ||
| 22-300,test/data/reads/22-300_R1.fastq.gz,test/data/reads/22-300_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/2/22,3/30/22,2022,Pelargonium x hortorum,CV-2,MD | ||
| 22-301,test/data/reads/22-301_R1.fastq.gz,test/data/reads/22-301_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/2/22,3/31/22,2022,Pelargonium x hortorum,CV-3,MD | ||
| 22-302,test/data/reads/22-302_R1.fastq.gz,test/data/reads/22-302_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/2/22,4/1/22,2022,Pelargonium x hortorum,CV-4,MD | ||
| 22-303,test/data/reads/22-303_R1.fastq.gz,test/data/reads/22-303_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/2/22,4/2/22,2022,Pelargonium x hortorum,CV-5,MD | ||
| 22-304,test/data/reads/22-304_R1.fastq.gz,test/data/reads/22-304_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/7/22,4/3/22,2022,Pelargonium x hortorum,CV-6,MD | ||
| 22-309,test/data/reads/22-309_R1.fastq.gz,test/data/reads/22-309_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/4/22,4/4/22,2022,Pelargonium x hortorum,CV-7,NY | ||
| 22-310,test/data/reads/22-310_R1.fastq.gz,test/data/reads/22-310_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/4/22,4/5/22,2022,P. x hortorum,CV-8,NY | ||
| 22-311,test/data/reads/22-311_R1.fastq.gz,test/data/reads/22-311_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/4/22,4/6/22,2022,P. x hortorum,CV-9,NY | ||
| 22-312,test/data/reads/22-312_R1.fastq.gz,test/data/reads/22-312_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/7/22,4/7/22,2022,P. x hortorum,CV-10,NY | ||
| 22-314,test/data/reads/22-314_R1.fastq.gz,test/data/reads/22-314_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/7/22,4/9/22,2022,P. x hortorum,CV-12,NY | ||
| 22-315,test/data/reads/22-315_R1.fastq.gz,test/data/reads/22-315_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/8/22,4/10/22,2022,P. x hortorum,CV-13,NY | ||
| 22-316,test/data/reads/22-316_R1.fastq.gz,test/data/reads/22-316_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/8/22,4/11/22,2022,P. x hortorum,CV-14,NY | ||
| 22-317,test/data/reads/22-317_R1.fastq.gz,test/data/reads/22-317_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/14/22,4/12/22,2022,P. x hortorum,CV-12,NY | ||
| 22-318,test/data/reads/22-318_R1.fastq.gz,test/data/reads/22-318_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/14/22,4/13/22,2022,P. x hortorum,CV-15,NY | ||
| 22-319,test/data/reads/22-319_R1.fastq.gz,test/data/reads/22-319_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/21/22,4/14/22,2022,P. x hortorum,CV-16,NY | ||
| 22-320,test/data/reads/22-320_R1.fastq.gz,test/data/reads/22-320_R2.fastq.gz,,,xan_test;subgroup,year;nursery,3/21/22,4/15/22,2022,P. x hortorum,CV-17,NY | ||
| 22-322,test/data/reads/22-322_R1.fastq.gz,test/data/reads/22-322_R2.fastq.gz,,,xan_test;subgroup,year;nursery,2001,4/17/22,2001,P. x hortorum,CV-18,KS | ||
| 22-324,test/data/reads/22-324_R1.fastq.gz,test/data/reads/22-324_R2.fastq.gz,,,xan_test;subgroup,year;nursery,1987,4/19/22,1987,P. x hortorum,NA,NA | ||
| 22-329A,test/data/reads/22-329A_R1.fastq.gz,test/data/reads/22-329A_R2.fastq.gz,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year;nursery,3/25/22,4/30/22,2022,P. x hortorum,CV-28,PA | ||
| 22-329B,test/data/reads/22-329B_R1.fastq.gz,test/data/reads/22-329B_R2.fastq.gz,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year;nursery,3/25/22,4/29/22,2022,P. x hortorum,CV-28,PA | ||
| 22-330,test/data/reads/22-330_R1.fastq.gz,test/data/reads/22-330_R2.fastq.gz,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year;nursery,3/25/22,5/1/22,2022,P. x hortorum,CV-29,PA | ||
| 22-331,test/data/reads/22-331_R1.fastq.gz,test/data/reads/22-331_R2.fastq.gz,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year;nursery,3/21/22,4/21/22,2022,Pelargonium x,CV-20,IN | ||
| 22-332,test/data/reads/22-332_R1.fastq.gz,test/data/reads/22-332_R2.fastq.gz,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year;nursery,3/21/22,4/22/22,2022,Pelargonium x,CV-21,IN | ||
| 22-333,test/data/reads/22-333_R1.fastq.gz,test/data/reads/22-333_R2.fastq.gz,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year;nursery,3/21/22,4/23/22,2022,Pelargonium x,CV-22,IN | ||
| 22-334,test/data/reads/22-334_R1.fastq.gz,test/data/reads/22-334_R2.fastq.gz,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year;nursery,3/21/22,4/24/22,2022,Pelargonium x,CV-23,IN | ||
| 22-335,test/data/reads/22-335_R1.fastq.gz,test/data/reads/22-335_R2.fastq.gz,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year;nursery,3/21/22,4/25/22,2022,Pelargonium x,CV-24,IN | ||
| 22-336,test/data/reads/22-336_R1.fastq.gz,test/data/reads/22-336_R2.fastq.gz,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year;nursery,3/21/22,4/26/22,2022,Pelargonium zonale,CV-25,IN | ||
| 22-337,test/data/reads/22-337_R1.fastq.gz,test/data/reads/22-337_R2.fastq.gz,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year;nursery,3/21/22,4/27/22,2022,Pelargonium zonale,CV-26,IN | ||
| sample_id,path_1,path_2,sequence_type,reference,reference_id,report_group,color_by,date_isolated,date_received,year,host,cv_key,nursery,, | ||
| 22-299,test/data/reads/22-299_R1.fastq.gz,test/data/reads/22-299_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/2/22,3/29/22,2022,Pelargonium x hortorum,CV-1,MD | ||
| 22-300,test/data/reads/22-300_R1.fastq.gz,test/data/reads/22-300_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/2/22,3/30/22,2022,Pelargonium x hortorum,CV-2,MD | ||
| 22-301,test/data/reads/22-301_R1.fastq.gz,test/data/reads/22-301_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/2/22,3/31/22,2022,Pelargonium x hortorum,CV-3,MD | ||
| 22-302,test/data/reads/22-302_R1.fastq.gz,test/data/reads/22-302_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/2/22,4/1/22,2022,Pelargonium x hortorum,CV-4,MD | ||
| 22-303,test/data/reads/22-303_R1.fastq.gz,test/data/reads/22-303_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/2/22,4/2/22,2022,Pelargonium x hortorum,CV-5,MD | ||
| 22-304,test/data/reads/22-304_R1.fastq.gz,test/data/reads/22-304_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/7/22,4/3/22,2022,Pelargonium x hortorum,CV-6,MD | ||
| 22-309,test/data/reads/22-309_R1.fastq.gz,test/data/reads/22-309_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/4/22,4/4/22,2022,Pelargonium x hortorum,CV-7,NY | ||
| 22-310,test/data/reads/22-310_R1.fastq.gz,test/data/reads/22-310_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/4/22,4/5/22,2022,P. x hortorum,CV-8,NY | ||
| 22-311,test/data/reads/22-311_R1.fastq.gz,test/data/reads/22-311_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/4/22,4/6/22,2022,P. x hortorum,CV-9,NY | ||
| 22-312,test/data/reads/22-312_R1.fastq.gz,test/data/reads/22-312_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/7/22,4/7/22,2022,P. x hortorum,CV-10,NY | ||
| 22-314,test/data/reads/22-314_R1.fastq.gz,test/data/reads/22-314_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/7/22,4/9/22,2022,P. x hortorum,CV-12,NY | ||
| 22-315,test/data/reads/22-315_R1.fastq.gz,test/data/reads/22-315_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/8/22,4/10/22,2022,P. x hortorum,CV-13,NY | ||
| 22-316,test/data/reads/22-316_R1.fastq.gz,test/data/reads/22-316_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/8/22,4/11/22,2022,P. x hortorum,CV-14,NY | ||
| 22-317,test/data/reads/22-317_R1.fastq.gz,test/data/reads/22-317_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/14/22,4/12/22,2022,P. x hortorum,CV-12,NY | ||
| 22-318,test/data/reads/22-318_R1.fastq.gz,test/data/reads/22-318_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/14/22,4/13/22,2022,P. x hortorum,CV-15,NY | ||
| 22-319,test/data/reads/22-319_R1.fastq.gz,test/data/reads/22-319_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/21/22,4/14/22,2022,P. x hortorum,CV-16,NY | ||
| 22-320,test/data/reads/22-320_R1.fastq.gz,test/data/reads/22-320_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,3/21/22,4/15/22,2022,P. x hortorum,CV-17,NY | ||
| 22-322,test/data/reads/22-322_R1.fastq.gz,test/data/reads/22-322_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,2001,4/17/22,2001,P. x hortorum,CV-18,KS | ||
| 22-324,test/data/reads/22-324_R1.fastq.gz,test/data/reads/22-324_R2.fastq.gz, Illumina,,,xan_test,subgroup,year,nursery,1987,4/19/22,1987,P. x hortorum,NA,NA | ||
| 22-329A,test/data/reads/22-329A_R1.fastq.gz,test/data/reads/22-329A_R2.fastq.gz, Illumina,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year,nursery,3/25/22,4/30/22,2022,P. x hortorum,CV-28,PA, | ||
| 22-329B,test/data/reads/22-329B_R1.fastq.gz,test/data/reads/22-329B_R2.fastq.gz, Illumina,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year,nursery,3/25/22,4/29/22,2022,P. x hortorum,CV-28,PA, | ||
| 22-330,test/data/reads/22-330_R1.fastq.gz,test/data/reads/22-330_R2.fastq.gz, Illumina,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year,nursery,3/25/22,5/1/22,2022,P. x hortorum,CV-29,PA, | ||
| 22-331,test/data/reads/22-331_R1.fastq.gz,test/data/reads/22-331_R2.fastq.gz, Illumina,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year,nursery,3/21/22,4/21/22,2022,Pelargonium x,CV-20,IN, | ||
| 22-332,test/data/reads/22-332_R1.fastq.gz,test/data/reads/22-332_R2.fastq.gz, Illumina,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year,nursery,3/21/22,4/22/22,2022,Pelargonium x,CV-21,IN, | ||
| 22-333,test/data/reads/22-333_R1.fastq.gz,test/data/reads/22-333_R2.fastq.gz, Illumina,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year,nursery,3/21/22,4/23/22,2022,Pelargonium x,CV-22,IN, | ||
| 22-334,test/data/reads/22-334_R1.fastq.gz,test/data/reads/22-334_R2.fastq.gz, Illumina,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year,nursery,3/21/22,4/24/22,2022,Pelargonium x,CV-23,IN, | ||
| 22-335,test/data/reads/22-335_R1.fastq.gz,test/data/reads/22-335_R2.fastq.gz, Illumina,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year,nursery,3/21/22,4/25/22,2022,Pelargonium x,CV-24,IN, | ||
| 22-336,test/data/reads/22-336_R1.fastq.gz,test/data/reads/22-336_R2.fastq.gz, Illumina,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year,nursery,3/21/22,4/26/22,2022,Pelargonium zonale,CV-25,IN, | ||
| 22-337,test/data/reads/22-337_R1.fastq.gz,test/data/reads/22-337_R2.fastq.gz, Illumina,test/data/refs/reference-22-331.fna,22_331_assembly,xan_test,year,nursery,3/21/22,4/27/22,2022,Pelargonium zonale,CV-26,IN, |
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