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poppr version 2.6.0
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@zkamvar zkamvar released this 11 Jan 17:01
· 364 commits to main since this release
v.2.6.0
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zkamvar Zhian N. Kamvar
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Learn about vigilant mode.
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zkamvar Zhian N. Kamvar
GPG key ID: 88EFAD5774DF822F
Expired
Learn about vigilant mode.

The biggest feature of this release is the scaling of nodes by area in the minimum spanning networks. More details on that here: https://zkamvar.github.io/blog/poppr-2-6-0-better-network-plotting/

NEW FUNCTIONS

  • The new function boot.ia() is conceptually similar to resample.ia(),
    except it resamples with replacement.

NEW FEATURES

  • The function resample.ia() now can resample individuals weighted by their
    Psex value.
  • The minimum spanning networks will now scale nodes by area instead of radius.
    This gives a more accurate picture of the differences between MLGs. See
    #154 for details.
  • A legend for samples/node is now added to all minimum spanning networks. See
    #158 for details.
  • The imsn() option for node size scale has been changed to a slider.

BUG FIX

  • An issue where data with sample names containing apostrophes could not be
    imported was fixed (Identified in
    #156).
  • a bug in imsn() where custom MLGs would result in an error was fixed. See
    #155 for details.
  • a bug in plot_poppr_msn() where setting scale.leg = FALSE would result in a
    very small MSN plot was fixed.
  • mlg() now works properly for snpclone and genlight objects. See
    #155 for details.

DEPENDENCIES

  • The minimum version of igraph has been set to 1.0.0.
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