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Poppr version 2.8.3

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@zkamvar zkamvar released this 18 Jun 19:22

This version of poppr has a bug fix, a much-needed improvement to the display of single-population nodes in MSN (by @fdchevalier), and minor changes to stability that should not be noticed by users.

The new MSN no longer draw the single-population nodes as a pie, so they look more presentable

msn-2019-06-18-4

I also accidentally forgot to include the NEWS file in the official release, but you can still keep track of that here:

BUG FIX

  • read.genalex() now correctly parses strata when the user imports data that
    contains duplicated data AND has some individuals named as integers less than
    the number of samples in the data (prepended by zeroes)
    (See #202).

NEW FEATURES

  • MSN functions: nodes with single populations displayed as circles instead of
    pies. (@fdchevalier, #203)

MISC

  • mlg.vector() is now safer as it now uses a for loop instead of a
    function with the out-of-scope operator (<<-) (see #205)
  • shufflepop() is now safer as it now uses a for loop instead of a
    function with the out-of-scope operator (<<-) (see #205)
  • The MLG class gains a new distenv slot, which will store the environment
    where the distance function or matrix exists. This is accompanied by an
    accessor of the same name (see #206).
  • "mlg.filter<-"() replacement methods will no longer search the global
    environment when evaluating the distance function or matrix (see #206).
  • Tests for mlg.filter() no longer assign objects to the global environment
  • DOIs for the publications have been added to the DESCRIPTION