fix typos

guigolab · Jan 25, 2023 · 511182d · 511182d
1 parent afe6f2a
commit 511182d
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/README.md b/README.md
@@ -20,7 +20,7 @@ This pipeline requires the compressed genome assembly and the taxid of the speci
 ```
 export NXF_VER=22.04.4
 nextflow run guigolab/geneidx -profile <docker/singularity>
-                                        --assembly <GENOME>.fa,gz
+                                        --genome <GENOME>.fa.gz
                                         --taxid <TAXID>
                                         --outdir <OUTPUT_directory>
 ```
@@ -31,7 +31,7 @@ git clone https://github.com/guigolab/geneidx.git
 cd geneidx
 export NXF_VER=22.04.4
 nextflow run main.nf -profile <docker/singularity>
-                      --assembly <GENOME>.fa.gz
+                      --genome <GENOME>.fa.gz
                       --taxid <TAXID>
                       --outdir <OUTPUT_directory>
 ```

diff --git a/main.nf b/main.nf
@@ -22,7 +22,7 @@ params.help             = false
 
 // this prints the input parameters
 log.info """
-GENEID+BLASTx - NextflowPipeline
+GeneidX
 =============================================
 output			: ${params.output}
 genome			: ${params.genome}
@@ -32,7 +32,7 @@ taxon			: ${params.taxid}
 
 // this prints the help in case you use --help parameter in the command line and it stops the pipeline
 if (params.help) {
-    log.info 'This is the GeneidX test pipeline in Nextflow'
+    log.info 'This is the GeneidX pipeline in Nextflow'
     log.info 'Please define the genome file and the taxid of the species.\n'
     log.info 'To define additional parameters checkout the params.config file.\n'
     log.info '\n'