Version 0.2.0
- Added ability to resolve relative paths in the index file against its current location
- Change default profile to
starrsem
- Set bamSort to
samtools
in default profile - Fixed Empty lines in the index file result in a
ArrayIndexOutOfBoundsException
#7 - Update documentation - resolve #6
- Add genomeIndex parameter - fix #9
- Add samtools index to mergeBam command template
- Add mapping templates for
STAR 2.5
- Fix input BAMs considered as paired-end - resolve #14
- Fix error when using both Genome and Transcriptome bams as inputs - fix #13
- Enable trace by default in nextflow config
Full Changelog: v0.1.0...v0.2.0