Remove unused umls mapper for loading variant_gene_df method

gyorilab · Dec 12, 2023 · 23d09a4 · 23d09a4
1 parent 3fb36e2
commit 23d09a4
Showing 1 changed file with 0 additions and 13 deletions.
diff --git a/src/indra_cogex/sources/disgenet/__init__.py b/src/indra_cogex/sources/disgenet/__init__.py
@@ -248,19 +248,6 @@ def load_disgenet_variant_gene(
         read_csv_kwargs=dict(dtype={"geneId": str, "snpId": str}),
         force=force,
     )
-    mapper_path = SUBMODULE.join(name="umls_mapper.pkl")
-    if mapper_path.is_file():
-        click.echo("loading UMLS mapper")
-        umls_mapper = pickle.loads(mapper_path.read_bytes())
-        click.echo("done loading UMLS mapper")
-    else:
-        click.echo("loading UMLS mapper")
-        umls_mapper = UmlsMapper()
-        click.echo("writing UMLS mapper")
-        mapper_path.write_bytes(
-            pickle.dumps(umls_mapper, protocol=pickle.HIGHEST_PROTOCOL)
-        )
-        click.echo("done writing UMLS mapper")
 
     click.echo("mapping HGNC")
     df["hgnc_id"] = df["geneId"].map(