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Improve ClinicalTrials.gov ingest#144

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bgyori merged 15 commits intomaingyorilab/indra_cogex:mainfrom improve-clinical-trialsgyorilab/indra_cogex:improve-clinical-trialsCopy head branch name to clipboardDec 13, 2023

+277-80

Commits

Commits on Dec 13, 2023

• Improve Clinical Trials ingest

  

  cthoyt

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  bgyori

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  27fce38

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• Update download.py

  

  cthoyt

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  bgyori

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  ff3b464

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• Add additional fields

  

  cthoyt

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  d841704

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• Improve docs

  

  cthoyt

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  91f713a

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• Add data fields to NCT node

  

  cthoyt

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  562d35e

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• Update download.py

  

  cthoyt

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  950c4ec

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• Update names

  

  cthoyt

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  16abb1b

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• Remove extraneous logging

  

  cthoyt

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• Rename design_allocation to randomized and set as boolean

  

  kkaris

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  bgyori

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  04eb056

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• Set phase to integer

  

  kkaris

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  57158c8

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• Get start date of trial

  

  kkaris

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  b75f5de

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• Process dataframe on load for relevant columns

  

  kkaris

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  aa9fa16

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• Use helper to get None when NaN

  

  kkaris

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  bgyori

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  ba38c52

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• Formatting

  

  kkaris

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  bgyori

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  19b92a6

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• Update test csv file for clinicaltrials tests

  

  kkaris

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