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| Original file line number | Diff line number | Diff line change |
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@@ -15,21 +15,21 @@ env: | |
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| # The jobs are split into: | ||
| # 1. a dependency build step (setup), and | ||
| # 2. a GSI build step (build) | ||
| # 2. a GSI build step (gsi) | ||
| # The setup is run once and the environment is cached, | ||
| # so each build of GSI can reuse the cached dependencies to save time (and compute). | ||
| # so each subsequent build of GSI can reuse the cached dependencies to save time (and compute). | ||
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| jobs: | ||
| setup: | ||
| runs-on: ubuntu-latest | ||
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| steps: | ||
| # Checkout the GSI to get the ci/spack.yaml file | ||
| - name: checkout-gsi | ||
| - name: checkout | ||
| if: steps.cache-env.outputs.cache-hit != 'true' | ||
| uses: actions/checkout@v3 | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| path: GSI | ||
| path: gsi | ||
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| # Cache spack, compiler and dependencies | ||
| - name: cache-env | ||
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@@ -39,33 +39,34 @@ jobs: | |
| path: | | ||
| spack | ||
| ~/.spack | ||
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('GSI/ci/spack.yaml') }} | ||
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('gsi/ci/spack.yaml') }} | ||
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| # Install dependencies using Spack | ||
| - name: install-dependencies-with-spack | ||
| if: steps.cache-env.outputs.cache-hit != 'true' | ||
| run: | | ||
| sudo apt-get install cmake | ||
| git clone -c feature.manyFiles=true https://github.com/NOAA-EMC/spack.git | ||
| git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git | ||
| source spack/share/spack/setup-env.sh | ||
| spack env create gsi-env GSI/ci/spack.yaml | ||
| spack env create gsi-env gsi/ci/spack.yaml | ||
| spack env activate gsi-env | ||
| spack compiler find | ||
| sudo apt install cmake | ||
| spack external find | ||
| spack add [email protected] | ||
| spack concretize | ||
| spack install -v --fail-fast --dirty | ||
| spack clean -a | ||
| build: | ||
| gsi: | ||
| needs: setup | ||
| runs-on: ubuntu-latest | ||
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| steps: | ||
| - name: checkout-gsi | ||
| uses: actions/checkout@v3 | ||
| - name: checkout | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| path: GSI | ||
| path: gsi | ||
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| - name: cache-env | ||
| id: cache-env | ||
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@@ -74,13 +75,13 @@ jobs: | |
| path: | | ||
| spack | ||
| ~/.spack | ||
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('GSI/ci/spack.yaml') }} | ||
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('gsi/ci/spack.yaml') }} | ||
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| - name: build-gsi | ||
| - name: build | ||
| run: | | ||
| source spack/share/spack/setup-env.sh | ||
| spack env activate gsi-env | ||
| cd GSI | ||
| cd gsi | ||
| mkdir -p build && cd build | ||
| cmake -DCMAKE_INSTALL_PREFIX=../install -DGSI_MODE=Regional -DENKF_MODE=GFS -DBUILD_REG_TESTING=OFF .. | ||
| make -j2 VERBOSE=1 | ||
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| Original file line number | Diff line number | Diff line change |
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@@ -6,8 +6,8 @@ spack: | |
| - intel | ||
| - gcc@10:10 | ||
| specs: | ||
| - netcdf-c@4.7.4 | ||
| - netcdf-fortran@4.5.3 | ||
| - netcdf-c@4.9.2 | ||
| - netcdf-fortran@4.6.0 | ||
| - [email protected] | ||
| - [email protected] | ||
| - [email protected] | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,30 +1,32 @@ | ||
| help([[ | ||
| ]]) | ||
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| load("cmake/3.22.0") | ||
| load("python/3.7.9") | ||
| load("ncarenv/1.3") | ||
| load("gnu/11.2.0") | ||
| load("mpt/2.25") | ||
| load("ncarcompilers/0.5.0") | ||
| unload("intel") | ||
| unload("netcdf") | ||
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| prepend_path("MODULEPATH", "/glade/work/epicufsrt/contrib/hpc-stack/gnu11.2.0/modulefiles/stack") | ||
| unload("ncarenv/1.3") | ||
| unload("intel/19.1.1") | ||
| unload("ncarcompilers/0.5.0") | ||
| unload("mpt/2.25") | ||
| unload("netcdf/4.8.1") | ||
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| load("hpc/1.2.0") | ||
| load("hpc-gnu/11.2.0") | ||
| load("hpc-mpt/2.25") | ||
| prepend_path("MODULEPATH", "/glade/work/epicufsrt/contrib/spack-stack/cheyenne/spack-stack-1.4.1/envs/unified-env/install/modulefiles/Core") | ||
| prepend_path("MODULEPATH", "/glade/work/jedipara/cheyenne/spack-stack/modulefiles/misc") | ||
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| load("gsi_common") | ||
| local stack_python_ver=os.getenv("stack_python_ver") or "3.9.12" | ||
| local stack_gnu_ver=os.getenv("stack_gnu_ver") or "10.1.0" | ||
| local stack_openmpi_ver=os.getenv("stack_openmpi_ver") or "4.1.1" | ||
| local cmake_ver=os.getenv("cmake_ver") or "3.22.0" | ||
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| load(pathJoin("stack-gcc", stack_gnu_ver)) | ||
| load(pathJoin("stack-openmpi", stack_openmpi_ver)) | ||
| load(pathJoin("stack-python", stack_python_ver)) | ||
| load(pathJoin("cmake", cmake_ver)) | ||
| load(pathJoin("prod_util", os.getenv("prod_util_ver") or "1.2.2")) | ||
| load(pathJoin("openblas", os.getenv("openblas_ver") or "0.3.23")) | ||
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| pushenv("GSI_BINARY_SOURCE_DIR", "/glade/work/epicufsrt/contrib/GSI_fix/fix") | ||
| load("gsi_common") | ||
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| pushenv("CC", "mpicc") | ||
| pushenv("FC", "mpif90") | ||
| pushenv("CXX", "mpicxx") | ||
| pushenv("CFLAGS", "-xHOST") | ||
| pushenv("FFLAGS", "-xHOST") | ||
| pushenv("GSI_BINARY_SOURCE_DIR", "/glade/work/epicufsrt/contrib/GSI_data/fix/20230601") | ||
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| whatis("Description: GSI environment on Cheyenne with GNU Compilers") |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,26 +1,32 @@ | ||
| help([[ | ||
| ]]) | ||
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| load("cmake/3.22.0") | ||
| load("python/3.7.9") | ||
| load("ncarenv/1.3") | ||
| load("intel/2022.1") | ||
| load("mpt/2.25") | ||
| load("ncarcompilers/0.5.0") | ||
| unload("ncarenv/1.3") | ||
| unload("intel/19.1.1") | ||
| unload("ncarcompilers/0.5.0") | ||
| unload("mpt/2.25") | ||
| unload("netcdf/4.8.1") | ||
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| prepend_path("MODULEPATH", "/glade/work/epicufsrt/contrib/hpc-stack/intel2022.1/modulefiles/stack") | ||
| prepend_path("MODULEPATH", "/glade/work/epicufsrt/contrib/spack-stack/cheyenne/spack-stack-1.4.1/envs/unified-env/install/modulefiles/Core") | ||
| prepend_path("MODULEPATH", "/glade/work/jedipara/cheyenne/spack-stack/modulefiles/misc") | ||
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| load("hpc/1.2.0") | ||
| load("hpc-intel/2022.1") | ||
| load("hpc-mpt/2.25") | ||
| load("mkl/2022.1") | ||
| local stack_python_ver=os.getenv("stack_python_ver") or "3.9.12" | ||
| local stack_intel_ver=os.getenv("stack_intel_ver") or "19.1.1.217" | ||
| local stack_mpi_ver=os.getenv("stack_mpi_ver") or "2019.7.217" | ||
| local cmake_ver=os.getenv("cmake_ver") or "3.22.0" | ||
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| load("gsi_common") | ||
| load(pathJoin("stack-intel", stack_intel_ver)) | ||
| load(pathJoin("stack-intel-mpi", stack_mpi_ver)) | ||
| load(pathJoin("stack-python", stack_python_ver)) | ||
| load(pathJoin("cmake", cmake_ver)) | ||
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| load(pathJoin("prod_util", os.getenv("prod_util_ver") or "1.2.2")) | ||
| load("gsi_common") | ||
| load(pathJoin("prod-util", os.getenv("prod_util_ver") or "1.2.2")) | ||
| pushenv("GSI_BINARY_SOURCE_DIR", "/glade/work/epicufsrt/contrib/GSI_data/fix/20230911") | ||
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| pushenv("CFLAGS", "-xHOST") | ||
| pushenv("FFLAGS", "-xHOST") | ||
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| pushenv("GSI_BINARY_SOURCE_DIR", "/glade/work/epicufsrt/contrib/GSI_data/fix/20230601") | ||
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| whatis("Description: GSI environment on Cheyenne with Intel Compilers") |
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