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[release] 0.2.110 (#12770)
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Co-authored-by: Daniel Goldstein <[email protected]>
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danking and daniel-goldstein authored Mar 8, 2023
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2 changes: 1 addition & 1 deletion hail/Makefile
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Expand Up @@ -14,7 +14,7 @@ BRANCH := $(shell git rev-parse --abbrev-ref HEAD)
SCALA_VERSION ?= 2.12.13
SPARK_VERSION ?= 3.3.0
HAIL_MAJOR_MINOR_VERSION := 0.2
HAIL_PATCH_VERSION := 109
HAIL_PATCH_VERSION := 110
HAIL_PIP_VERSION := $(HAIL_MAJOR_MINOR_VERSION).$(HAIL_PATCH_VERSION)
HAIL_VERSION := $(HAIL_PIP_VERSION)-$(SHORT_REVISION)
ELASTIC_MAJOR_VERSION ?= 7
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28 changes: 28 additions & 0 deletions hail/python/hail/docs/change_log.md
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Expand Up @@ -24,6 +24,34 @@ an earlier version of Hail to read files written in a later version.

---

## Version 0.2.110

Released 2023-03-08

### New Features

- (hail#12643) In Query on Batch, `hl.skat(..., logistic=True)` is now supported.
- (hail#12643) In Query on Batch, `hl.liftover` is now supported.
- (hail#12629) In Query on Batch, `hl.ibd` is now supported.
- (hail#12722) Add `hl.simulate_random_mating` to generate a population from founders under the assumption of random mating.
- (hail#12701) Query on Spark now officially supports Spark 3.3.0 and Dataproc 2.1.x

### Performance Improvements

- (hail#12679) In Query on Batch, `hl.balding_nichols_model` is slightly faster. Also added `hl.utils.genomic_range_table` to quickly create a table keyed by locus.

### Bug Fixes

- (hail#12711) In Query on Batch, fix null pointer exception (manifesting as `scala.MatchError: null`) when reading data from requester pays buckets.
- (hail#12739) Fix `hl.plot.cdf`, `hl.plot.pdf`, and `hl.plot.joint_plot` which were broken by changes in Hail and changes in bokeh.
- (hail#12735) Fix (hail#11738) by allowing user to override default types in `to_pandas`.
- (hail#12760) Mitigate some JVM bytecode generation errors, particularly those related to too many method parameters.
- (hail#12766) Fix (hail#12759) by loosening `parsimonious` dependency pin.
- (hail#12732) In Query on Batch, fix bug that sometimes prevented terminating a pipeline using Control-C.
- (hail#12771) Use a version of `jgscm` whose version complies with PEP 440.

---

## Version 0.2.109

Released 2023-02-08
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6 changes: 6 additions & 0 deletions hail/python/hailtop/batch/docs/change_log.rst
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Change Log
==========

**Version 0.2.110**

- (`#12734 <https://github.com/hail-is/hail/pull/12734>`__) :meth:`.PythonJob.call` now immediately errors when supplied arguments are incompatible with the called function instead of erroring only when the job is run.
- (`#12726 <https://github.com/hail-is/hail/pull/12726>`__) :class:`.PythonJob` now supports intermediate file resources the same as :class:`.BashJob`.
- (`#12684 <https://github.com/hail-is/hail/pull/12684>`__) :class:`.PythonJob` now correctly uses the default region when a specific region for the job is not given.

**Version 0.2.103**

- Added a new method Job.regions() as well as a configurable parameter to the ServiceBackend to
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