Change name of repo to survivalstan #5

jburos · 2016-07-13T12:28:10Z

Main change is to rename the package to survivalstan.

Fixed a bug (#4) causing stanity not to be imported as a requirement.

Various minor changes to the API, including

jburos added 30 commits July 1, 2016 15:19

first draft of extract baseline hazard functions

9321493

fix merge/join bug

0f2788e

including alt spec of pem model

cf58e0d

variation of model playing with constraints on hyper params

b3e8d9c

reparameterize model to remove gamma prior on baseline hazard

2027570

test limited version of alt-spec model

3d8eb4c

add print statements

1ea574f

minor tweak

1399df4

reparam of grp_mu

c89bf93

fix constraints on beta_sigma

1be707a

rename coefs3 -> coefs4

0fe3dca

test model

fb9bd39

fix append_row syntax

35d65f7

first draft adding iter to coefs df

71f1eaf

add optional param stan_data to fit_stan_survival_model

f5034e9

fix update dict bug

e4763da

remove print method, used for debugging

8f43c6b

modify stan.models to contain string for each model

c6ee5b0

additional models

1a77b60

rename stanmodels to survivalstan

0201845

restore stan.py; move previous stan.py to utils.py

91ea869

remove conflicting models object from utils

6008299

rename stan.py to models.py

89e4985

attempt to clean up file modules

5f08eee

fix __init__.py

afdc7c6

clean up __init__.py

c3dac1a

remove dependencies from requirements

89a2eba

first attempt to fix issue #4

b36e899

second attempt to address #4

5d9225f

update stanity req

b476526

jburos merged commit 4bdbeb7 into master Jul 15, 2016

jburos deleted the biostan branch July 15, 2016 22:55

Provide feedback