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Harald Grove edited this page Mar 30, 2015
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Welcome to the snptranslate wiki!
A new program, ioSNP.py, has been added and should be used instead of any previous programs/versions.
Use:
usage: ioSNP.py [-h] [-i INPUT] [-n INFORMAT] [-p PEDIGREE] [-m MARKERS]
[-c CHROM] [-o OUTPUT] [--output2 OUTPUT2] [-u OUTFORMAT]
[-v VERBOSE]
Converts between the following SNP-formats:
Alphaimpute Phase Sequenomlist Sequenommatrix Geno DMU Ldhat Genomelist Genomematrix Beagle APT Plink
optional arguments:
-h, --help show this help message and exit
-i INPUT, --input INPUT Input file
-n INFORMAT, --informat INFORMAT Input file format
-p PEDIGREE, --pedigree PEDIGREE Pedigree file
-m MARKERS, --markers MARKERS Marker file
-c CHROM, --chrom CHROM Chromosome
-o OUTPUT, --output OUTPUT Output file
--output2 OUTPUT2 Extra output file
-u OUTFORMAT, --outformat OUTFORMAT Output file format
-v VERBOSE, --verbose VERBOSE Prints runtime info