Skip to content

Commit

Permalink
mv draft
Browse files Browse the repository at this point in the history
  • Loading branch information
@harrig12
harrig12 committed Jun 24, 2024
1 parent 33fb4b3 commit 0afdddd
Show file tree
Hide file tree
Showing 92 changed files with 1,203 additions and 21,429 deletions.
180 changes: 105 additions & 75 deletions docs/blog.html
View file

Large diffs are not rendered by default.

88 changes: 67 additions & 21 deletions docs/cv.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2,12 +2,12 @@
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.4.550">
<meta name="generator" content="quarto-1.5.47">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">


<title>Cait Harrigan - Cait Harrigan, MSc.</title>
<title>Cait Harrigan, MSc. – Cait Harrigan</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
Expand Down Expand Up @@ -97,7 +97,7 @@
</a>
</div>
<div id="quarto-search" class="" title="Search"></div>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarCollapse">
Expand Down Expand Up @@ -126,7 +126,7 @@
</li>
</ul>
</div> <!-- /navcollapse -->
<div class="quarto-navbar-tools">
<div class="quarto-navbar-tools">
<a href="" class="quarto-color-scheme-toggle quarto-navigation-tool px-1" onclick="window.quartoToggleColorScheme(); return false;" title="Toggle dark mode"><i class="bi"></i></a>
</div>
</div> <!-- /container-fluid -->
Expand All @@ -136,7 +136,7 @@
<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
<!-- sidebar -->
<!-- margin-sidebar -->
<div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
<div id="quarto-margin-sidebar" class="sidebar margin-sidebar zindex-bottom">

</div>
<!-- main -->
Expand Down Expand Up @@ -232,7 +232,7 @@ <h2 class="anchored" data-anchor-id="research-experience">Research experience</h
</p>
</div>
<div class="g-col-1">
<span class="entry-when"> 03/24 - present </span>
<span class="entry-when"> 03/24 - 05/24 </span>
</div>
</div>
<div class="grid cv-entry">
Expand Down Expand Up @@ -308,6 +308,19 @@ <h2 class="anchored" data-anchor-id="posters">Posters</h2>
<div class="grid cv-entry">
<div class="g-col-1">
<p class="entry-bold">
SignaTree: Mapping the Evolution of Mutational Signatures on Tumour Phylogenies
</p>
<p class="entry-plain">
ISMB 2024
</p>
</div>
<div class="g-col-1">
<span class="entry-when"> 07/24 </span>
</div>
</div>
<div class="grid cv-entry">
<div class="g-col-1">
<p class="entry-bold">
Dirichlet allocation of mutations to model DDR in cancer
</p>
<p class="entry-plain">
Expand Down Expand Up @@ -370,7 +383,7 @@ <h2 class="anchored" data-anchor-id="fellowships-awards">Fellowships &amp; Award
</p>
</div>
<div class="g-col-1">
<span class="entry-when"> 03/24 - present </span>
<span class="entry-when"> 03/24 - 05/24 </span>
</div>
</div>
<div class="grid cv-entry">
Expand Down Expand Up @@ -968,7 +981,7 @@ <h2 class="anchored" data-anchor-id="mentorship">Mentorship</h2>
</div>
<hr>
<center>
Last updated: May 2024
Last updated: Jun 2024
</center>


Expand Down Expand Up @@ -1154,18 +1167,7 @@ <h2 class="anchored" data-anchor-id="mentorship">Mentorship</h2>
}
return false;
}
const clipboard = new window.ClipboardJS('.code-copy-button', {
text: function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
if (isCodeAnnotation(childEl)) {
childEl.remove();
}
}
return codeEl.innerText;
}
});
clipboard.on('success', function(e) {
const onCopySuccess = function(e) {
// button target
const button = e.trigger;
// don't keep focus
Expand Down Expand Up @@ -1197,7 +1199,47 @@ <h2 class="anchored" data-anchor-id="mentorship">Mentorship</h2>
}, 1000);
// clear code selection
e.clearSelection();
}
const getTextToCopy = function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
if (isCodeAnnotation(childEl)) {
childEl.remove();
}
}
return codeEl.innerText;
}
const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
text: getTextToCopy
});
clipboard.on('success', onCopySuccess);
if (window.document.getElementById('quarto-embedded-source-code-modal')) {
// For code content inside modals, clipBoardJS needs to be initialized with a container option
// TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
text: getTextToCopy,
container: window.document.getElementById('quarto-embedded-source-code-modal')
});
clipboardModal.on('success', onCopySuccess);
}
var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
var mailtoRegex = new RegExp(/^mailto:/);
var filterRegex = new RegExp('/' + window.location.host + '/');
var isInternal = (href) => {
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
}
// Inspect non-navigation links and adorn them if external
var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)');
for (var i=0; i<links.length; i++) {
const link = links[i];
if (!isInternal(link.href)) {
// undo the damage that might have been done by quarto-nav.js in the case of
// links that we want to consider external
if (link.dataset.originalHref !== undefined) {
link.href = link.dataset.originalHref;
}
}
}
function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
const config = {
allowHTML: true,
Expand Down Expand Up @@ -1232,7 +1274,11 @@ <h2 class="anchored" data-anchor-id="mentorship">Mentorship</h2>
try { href = new URL(href).hash; } catch {}
const id = href.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
return note.innerHTML;
if (note) {
return note.innerHTML;
} else {
return "";
}
});
}
const xrefs = window.document.querySelectorAll('a.quarto-xref');
Expand Down
75 changes: 54 additions & 21 deletions docs/cv_2pg.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2,12 +2,12 @@
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.4.550">
<meta name="generator" content="quarto-1.5.47">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">


<title>Cait Harrigan - Cait Harrigan, MSc.</title>
<title>Cait Harrigan, MSc. – Cait Harrigan</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
Expand Down Expand Up @@ -97,7 +97,7 @@
</a>
</div>
<div id="quarto-search" class="" title="Search"></div>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarCollapse">
Expand Down Expand Up @@ -126,7 +126,7 @@
</li>
</ul>
</div> <!-- /navcollapse -->
<div class="quarto-navbar-tools">
<div class="quarto-navbar-tools">
<a href="" class="quarto-color-scheme-toggle quarto-navigation-tool px-1" onclick="window.quartoToggleColorScheme(); return false;" title="Toggle dark mode"><i class="bi"></i></a>
</div>
</div> <!-- /container-fluid -->
Expand All @@ -136,7 +136,7 @@
<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
<!-- sidebar -->
<!-- margin-sidebar -->
<div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
<div id="quarto-margin-sidebar" class="sidebar margin-sidebar zindex-bottom">

</div>
<!-- main -->
Expand Down Expand Up @@ -228,7 +228,7 @@ <h2 class="anchored" data-anchor-id="research-experience">Research Experience</h
</p>
</div>
<div class="g-col-1">
<span class="entry-when"> 03/24 - present </span>
<span class="entry-when"> 03/24 - 05/24 </span>
</div>
</div>
<div class="grid cv-entry">
Expand Down Expand Up @@ -270,7 +270,7 @@ <h2 class="anchored" data-anchor-id="fellowships-awards">Fellowships &amp; Award
</p>
</div>
<div class="g-col-1">
<span class="entry-when"> 03/24 - present </span>
<span class="entry-when"> 03/24 - 05/24 </span>
</div>
</div>
<div class="grid cv-entry">
Expand Down Expand Up @@ -467,7 +467,7 @@ <h2 class="anchored" data-anchor-id="research-mentorship">Research Mentorship</h
</div>
</div>
<center>
Last updated: May 2024
Last updated: Jun 2024
</center>


Expand Down Expand Up @@ -653,18 +653,7 @@ <h2 class="anchored" data-anchor-id="research-mentorship">Research Mentorship</h
}
return false;
}
const clipboard = new window.ClipboardJS('.code-copy-button', {
text: function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
if (isCodeAnnotation(childEl)) {
childEl.remove();
}
}
return codeEl.innerText;
}
});
clipboard.on('success', function(e) {
const onCopySuccess = function(e) {
// button target
const button = e.trigger;
// don't keep focus
Expand Down Expand Up @@ -696,7 +685,47 @@ <h2 class="anchored" data-anchor-id="research-mentorship">Research Mentorship</h
}, 1000);
// clear code selection
e.clearSelection();
}
const getTextToCopy = function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
if (isCodeAnnotation(childEl)) {
childEl.remove();
}
}
return codeEl.innerText;
}
const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
text: getTextToCopy
});
clipboard.on('success', onCopySuccess);
if (window.document.getElementById('quarto-embedded-source-code-modal')) {
// For code content inside modals, clipBoardJS needs to be initialized with a container option
// TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
text: getTextToCopy,
container: window.document.getElementById('quarto-embedded-source-code-modal')
});
clipboardModal.on('success', onCopySuccess);
}
var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
var mailtoRegex = new RegExp(/^mailto:/);
var filterRegex = new RegExp('/' + window.location.host + '/');
var isInternal = (href) => {
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
}
// Inspect non-navigation links and adorn them if external
var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)');
for (var i=0; i<links.length; i++) {
const link = links[i];
if (!isInternal(link.href)) {
// undo the damage that might have been done by quarto-nav.js in the case of
// links that we want to consider external
if (link.dataset.originalHref !== undefined) {
link.href = link.dataset.originalHref;
}
}
}
function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
const config = {
allowHTML: true,
Expand Down Expand Up @@ -731,7 +760,11 @@ <h2 class="anchored" data-anchor-id="research-mentorship">Research Mentorship</h
try { href = new URL(href).hash; } catch {}
const id = href.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
return note.innerHTML;
if (note) {
return note.innerHTML;
} else {
return "";
}
});
}
const xrefs = window.document.querySelectorAll('a.quarto-xref');
Expand Down
Loading

0 comments on commit 0afdddd

Please sign in to comment.