Updated part 2 of TM

TeachingModule/AnalysisMSData_FragPipe.qmd

@@ -197,21 +197,20 @@ Can the output from this analysis be reliably used for downstream applications g
 
 ::: {.question}
 What does it signify that the sample tissues have been fractionated as described in **Supplementary Information**?
-:::
+
 <ul>
     <li>Outline the fractionation process utilized.</li>
     <li>Explain the study design associated with this research.</li>
     <li>In your opinion, will increasing the number of fractions improve proteome coverage? Justify your reasoning.</li>
 </ul>
-
+:::
 
 When the run in FragPipe is done, please locate the output results and get an overview of the output.
 
 ::: {.question}
 What types of output are generated by FragPipe?
 :::
 
-
 For the downstream analysis, we will use the output from the list of combined proteins, which we will explore further in the following section.