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Add known human contaminant sequences in microbe genomes to decoys or host filtering steps
enhancement
New feature or request
#24
opened Oct 19, 2022 by
hermidalc
Finish SLURM setup so that workflow can get submitted to different nodes instead of running on one large node
enhancement
New feature or request
#23
opened Oct 16, 2022 by
hermidalc
Functionality to automatically collapse functional terms to larger pathways and associated read counts for appropriate functional DBs (i.e. GO, EC)
enhancement
New feature or request
#22
opened Oct 16, 2022 by
hermidalc
Input read host and decontaminant sequence filtering with HISAT2 (DNA, RNA) and STAR (RNA)
enhancement
New feature or request
#21
opened Oct 6, 2022 by
hermidalc
Use tximport-like approach to summarize Cedar abundance by functional ID
enhancement
New feature or request
#19
opened Jul 10, 2022 by
hermidalc
Cedar EM uncertainty/confidence scores
enhancement
New feature or request
#17
opened Jul 10, 2022 by
hermidalc
Map and summarize BAM read counts per CDS protein ID to functional DB IDs
enhancement
New feature or request
Input RNA-seq ribosomal and structural RNA filtering (e.g. with SILVA)
enhancement
New feature or request
#6
opened Jul 10, 2022 by
hermidalc
ProTip!
What’s not been updated in a month: updated:<2024-07-18.