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telatin authored Dec 3, 2019
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A rarefaction software written in C++11 to rarefy large high count datasets quickly and return diversity measures.

# Installation
The easiest way is to install from bioconda (https://anaconda.org/bioconda/rtk) using "conda install -c bioconda rtk".

For use in R, use "install.packages("rtk")".
![Miniconda](https://anaconda.org/bioconda/rtk/badges/installer/conda.svg)
![Date](https://anaconda.org/bioconda/rtk/badges/latest_release_date.svg)

The easiest way is to install from [Miniconda](https://docs.conda.io/en/latest/miniconda.html) (see [rtk package](https://anaconda.org/bioconda/rtk)) using:

conda install -c bioconda rtk

For use in R, use `install.packages("rtk")`.

Otherwise, download RTK from https://github.com/hildebra/Rarefaction/releases or compile from source.

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# Citation
If you use RTK in a publication, please consider citing the Bioinformatics application note at: https://academic.oup.com/bioinformatics/article/3111845/RTK-efficient-rarefaction-analysis-of-large
If you use RTK in a publication, please consider citing the Bioinformatics application note at: https://academic.oup.com/bioinformatics/article/3111845/RTK-efficient-rarefaction-analysis-of-large

> Saary, Paul, et al. "RTK: efficient rarefaction analysis of large datasets."
> Bioinformatics (2017)
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