Update l2phyloseq.R

the outdir for the phyloseq object is edited.
hildebra · Nov 15, 2021 · 2c5ca5b · 2c5ca5b
1 parent edc279d
commit 2c5ca5b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/R/l2phyloseq.R b/bin/R/l2phyloseq.R
@@ -123,7 +123,7 @@ if(keepUnclass==0 &&!is.null(physeq)){
 	physeq=subset_taxa(physeq, Domain != "?")
 }
 # Save the phyloseq object as an R object:
-save(physeq,file=paste0(strsplit(path_TABLE,"O")[[1]][1],"phyloseq.Rdata"))
+save(physeq,file=paste0(dirname(path_TABLE),"/phyloseq.Rdata"))
 
 
 cat("Phyloseq object is created: phyloseq.Rdata\n")