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HIT Bioinformatics Centre

Bioinformatics Centre, Harbin Institute of Technology

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  1. LAMSA LAMSA Public

    Forked from yangao07/LAMSA

    Long Approximate Matches-based Split Aligner

    C 13 2

  2. deBGA deBGA Public

    Forked from HongzheGuo/deBGA

    de Bruijn Graph-based read aligner

    C 11 5

  3. deSAMBA deSAMBA Public

    deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches

    C 10 6

  4. gcSV gcSV Public

    C 8 1

  5. deBWT deBWT Public

    Forked from DixianZhu/deBWT

    A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.

    C 6 1

  6. rMETL rMETL Public

    Forked from tjiangHIT/rMETL

    rMETL - realignment-based Mobile Element insertion detection Tool for Long read

    Python 6

Repositories

Showing 10 of 21 repositories
  • gcSV_call_results Public
    hitbc/gcSV_call_results’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Feb 10, 2025
  • gcSV Public
    hitbc/gcSV’s past year of commit activity
    C 8 GPL-3.0 1 1 0 Updated Feb 10, 2025
  • panSVR Public

    An NGS SV caller based on pan-genome

    hitbc/panSVR’s past year of commit activity
    C 3 MIT 1 1 0 Updated Aug 30, 2024
  • deSAMBA Public

    deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches

    hitbc/deSAMBA’s past year of commit activity
    C 10 MIT 6 2 0 Updated May 5, 2024
  • AnalysisScripts Public
    hitbc/AnalysisScripts’s past year of commit activity
    Python 4 MIT 2 0 0 Updated Sep 26, 2022
  • cuteSV Public Forked from tjiangHIT/cuteSV

    Long read based human genomic structural variation detection with cuteSV

    hitbc/cuteSV’s past year of commit activity
    Python 2 MIT 38 0 0 Updated Aug 31, 2022
  • TideHunter Public

    TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

    hitbc/TideHunter’s past year of commit activity
    C 1 MIT 0 0 0 Updated Oct 21, 2020
  • deSALT Public

    deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads

    hitbc/deSALT’s past year of commit activity
    2 MIT 0 0 0 Updated Apr 21, 2020
  • xQTLimp Public Forked from stormlovetao/xQTLimp

    xQTLImp: efficient and accurate xQTL summary statistics imputation

    hitbc/xQTLimp’s past year of commit activity
    C++ 3 3 0 0 Updated Mar 23, 2020
  • rMETL Public Forked from tjiangHIT/rMETL

    rMETL - realignment-based Mobile Element insertion detection Tool for Long read

    hitbc/rMETL’s past year of commit activity
    Python 6 MIT 4 0 0 Updated Oct 4, 2019
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