save feature after getting data from lined publications

hivdb · Jan 15, 2025 · 2136125 · 2136125
1 parent 101bebb
commit 2136125
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Showing 2 changed files with 6 additions and 0 deletions.
diff --git a/Main.py b/Main.py
@@ -75,6 +75,8 @@ def main():
 
     features = update_genbank_by_pubmed(features, lit_ref_match)
 
+    features.to_excel(virus_obj.genbank_feature_filled_file)
+
     # Create database using tables:
     #   GenBank Submission Set
     #   GenBank Features

diff --git a/viruses/virus.py b/viruses/virus.py
@@ -93,6 +93,10 @@ def genbank_feature_file(self):
     def genbank_feature_check_file(self):
         return self.timestamp_dir / f"{self.name}__GenBankFeatures_check_{timestamp}.xlsx"
 
+    @property
+    def genbank_feature_filled_file(self):
+        return self.timestamp_dir / f"{self.name}__GenBankFeatures_filled_{timestamp}.xlsx"
+
     @property
     def genbank_gene_file(self):
         return self.output_dir / f"{self.name}__GenBankGenes.xlsx"