Merge pull request #9 from RemeCare/master

Initialise project

README.md

@@ -1,4 +1,4 @@
-HR Monitoring apps
+Patient Monitoring Outcome
 ---
 IG
 <br> </br>

_genonce.sh

@@ -14,6 +14,8 @@ fi
 
 echo "$txoption"
 
+export JAVA_TOOL_OPTIONS="$JAVA_TOOL_OPTIONS -Dfile.encoding=UTF-8"
+
 publisher=$input_cache_path/$publisher_jar
 if test -f "$publisher"; then
 	java -jar $publisher -ig . $txoption $*

_updatePublisher.bat

@@ -216,4 +216,4 @@ start copy /y "_updatePublisher.new.bat" "_updatePublisher.bat" ^&^& del "_updat
 
 IF "%skipPrompts%"=="true" (
   PAUSE
-}
+)

_updatePublisher.sh

@@ -31,11 +31,7 @@ while [ "$#" -gt 0 ]; do
 done
 
 echo "Checking internet connection"
-case "$OSTYPE" in
-	linux-gnu* ) ping tx.fhir.org -4 -c 1 -w 1000 >/dev/null ;;
-  darwin* )	ping tx.fhir.org -c 1 >/dev/null ;;
-	*) echo "unknown: $OSTYPE"; exit 1 ;;
-esac
+curl -sSf tx.fhir.org > /dev/null
 
 if [ $? -ne 0 ] ; then
   echo "Offline (or the terminology server is down), unable to update.  Exiting"
@@ -121,13 +117,16 @@ if [[ $skipPrompts == true ]] || [[ $response =~ ^[yY].*$ ]]; then
 
   curl -L $gencont_sh_url -o /tmp/_gencontinuous.new
   cp /tmp/_gencontinuous.new _gencontinuous.sh
+  chmod +x _gencontinuous.sh
   rm /tmp/_gencontinuous.new
 
   curl -L $gen_sh_url -o /tmp/_genonce.new
   cp /tmp/_genonce.new _genonce.sh
+  chmod +x _genonce.sh
   rm  /tmp/_genonce.new
 
   curl -L $update_sh_url -o /tmp/_updatePublisher.new
   cp /tmp/_updatePublisher.new _updatePublisher.sh
+  chmod +x _updatePublisher.sh
   rm /tmp/_updatePublisher.new
 fi

input/fsh/example-blood-pressure.fsh

@@ -0,0 +1,17 @@
+Alias: $observation-category = http://terminology.hl7.org/CodeSystem/observation-category
+Alias: $loinc = http://loinc.org
+Alias: $vitalsigns = http://hl7.org/fhir/StructureDefinition/vitalsigns
+
+Instance: BloodPressureExample
+InstanceOf: $vitalsigns
+Usage: #example
+* status = #final
+* category = $observation-category#vital-signs "Vital Signs"
+* code = $loinc#85354-9 "Blood pressure"
+* subject.reference = "Patient/D358D4B4-6007-4C3E-A33B-056773F45DC9"
+* component[0].code = $loinc#8480-6 "Systolic blood pressure"
+* component[=].valueQuantity = 140 'mm[Hg]' "mmHg"
+* component[+].code = $loinc#8462-4 "Diastolic blood pressure"
+* component[=].valueQuantity = 74 'mm[Hg]' "mmHg"
+* device.reference = "Device/Byteflies Vital Signs"
+* effectiveDateTime = "2024-11-18T09:38:52+00:00"

input/fsh/example-body-temperature.fsh

@@ -0,0 +1,15 @@
+Alias: $observation-category = http://terminology.hl7.org/CodeSystem/observation-category
+Alias: $loinc = http://loinc.org
+Alias: $vitalsigns = http://hl7.org/fhir/StructureDefinition/vitalsigns
+
+Instance: BodyTemperatureExample
+InstanceOf: $vitalsigns
+Usage: #example
+* status = #final
+* category = $observation-category#vital-signs "Vital Signs"
+* code = $loinc#8310-5 "Body Temperature"
+* subject.reference = "Patient/EFD5E060-9522-48BE-9ECC-3BFA54EA3666"
+* component.code = $loinc#8310-5 "Body Temperature"
+* component.valueQuantity = 35.29 'Cel' "C"
+* device.reference = "Device/Byteflies Vital Signs"
+* effectiveDateTime = "2024-11-19T19:30:42+00:00"

input/fsh/example-body-weight.fsh

@@ -0,0 +1,15 @@
+Alias: $observation-category = http://terminology.hl7.org/CodeSystem/observation-category
+Alias: $loinc = http://loinc.org
+Alias: $vitalsigns = http://hl7.org/fhir/StructureDefinition/vitalsigns
+
+Instance: BodyWeightExample
+InstanceOf: $vitalsigns
+Usage: #example
+* status = #final
+* category = $observation-category#vital-signs "Vital Signs"
+* code = $loinc#29463-7 "Body Weight"
+* subject.reference = "Patient/D358D4B4-6007-4C3E-A33B-056773F45DC9"
+* component.code = $loinc#29463-7 "Body weight"
+* component.valueQuantity = 39.3 'kg' "kg"
+* device.reference = "Device/Byteflies Vital Signs"
+* effectiveDateTime = "2024-11-19T06:48:20+00:00"

input/fsh/example-heart-rate.fsh

@@ -0,0 +1,15 @@
+Alias: $observation-category = http://terminology.hl7.org/CodeSystem/observation-category
+Alias: $loinc = http://loinc.org
+Alias: $vitalsigns = http://hl7.org/fhir/StructureDefinition/vitalsigns
+
+Instance: HeartRateExample
+InstanceOf: $vitalsigns
+Usage: #example
+* status = #final
+* category = $observation-category#vital-signs "Vital Signs"
+* code = $loinc#8867-4 "Heart rate"
+* subject.reference = "Patient/D358D4B4-6007-4C3E-A33B-056773F45DC9"
+* component.code = $loinc#8867-4 "Heart rate"
+* component.valueQuantity = 78 '/min' "beats/min"
+* device.reference = "Device/Byteflies Vital Signs"
+* effectiveDateTime = "2024-11-18T09:38:52+00:00"

input/fsh/example-oxygen-saturation.fsh

@@ -0,0 +1,15 @@
+Alias: $observation-category = http://terminology.hl7.org/CodeSystem/observation-category
+Alias: $loinc = http://loinc.org
+Alias: $vitalsigns = http://hl7.org/fhir/StructureDefinition/vitalsigns
+
+Instance: OxygenSaturationExample
+InstanceOf: $vitalsigns
+Usage: #example
+* status = #final
+* category = $observation-category#vital-signs "Vital Signs"
+* code = $loinc#59408-5 "Oxygen saturation"
+* subject.reference = "Patient/BE84DC42-2B5D-464C-AFFD-57DB87BD7D48"
+* component.code = $loinc#59408-5 "Oxygen saturation in Arterial blood by Pulse oximetry"
+* component.valueQuantity = 98 '%' "%O2"
+* device.reference = "Device/Byteflies Vital Signs"
+* effectiveDateTime = "2024-11-19T11:16:55+00:00"

input/fsh/example-respiratory-rate.fsh

@@ -0,0 +1,16 @@
+Alias: $observation-category = http://terminology.hl7.org/CodeSystem/observation-category
+Alias: $loinc = http://loinc.org
+Alias: $vitalsigns = http://hl7.org/fhir/StructureDefinition/vitalsigns
+
+Instance: RespiratoryRateExample
+InstanceOf: $vitalsigns
+Usage: #example
+* status = #final
+* category = $observation-category#vital-signs "Vital Signs"
+* code = $loinc#9279-1 "Respiratory rate"
+* subject.reference = "Patient/BE84DC42-2B5D-464C-AFFD-57DB87BD7D48"
+* component.code = $loinc#9279-1 "Respiratory rate"
+* component.valueQuantity = 17.35 '/min' "breaths/minute"
+* device.reference = "Device/Byteflies Vital Signs"
+* effectivePeriod.start = "2024-11-15T09:56:00+00:00"
+* effectivePeriod.end = "2024-11-15T09:57:00+00:00"

input/pagecontent/index.md

@@ -0,0 +1,101 @@
+# Introduction
+
+# Purpose
+
+# Scope
+
+# Audience
+
+# Intellectual Property Considerations
+
+While this implementation guide and the underlying FHIR are licensed as public domain, this guide includes examples making use of terminologies such 
+as LOINC, SNOMED CT and others which have more restrictive licensing requirements. Implementers should make themselves familiar with licensing and 
+any other constraints of terminologies, questionnaires, and other components used as part of their implementation process. In some cases, 
+licensing requirements may limit the systems that data captured using certain questionnaires may be shared with.
+
+# Disclaimer
+
+The specification herewith documented is a demo working specification, and may not be used for any implementation purposes. 
+This draft is provided without warranty of completeness or consistency, and the official publication supersedes this draft.
+No liability can be inferred from the use or misuse of this specification, or its consequences.
+
+
+# Use Cases and Scenarios
+## Overview  
+## Common Scenarios  
+### Monitoring Chronic Conditions (e.g., Diabetes, Hypertension)  
+### Post-Surgical Recovery Monitoring  
+### COVID-19 or Infectious Disease Monitoring
+### Behavioral Health Monitoring  
+
+# Key Concepts and Definitions
+## FHIR Basics for RPM  
+## Observation Resource Overview  
+## Profiles, Extensions, and Value Sets  
+## Terminologies and Coding Systems (e.g., LOINC, SNOMED CT)  
+
+# RPM Observation Profiles
+## General Structure of Observation Profiles  
+## Core RPM Observations  
+### Vital Signs (e.g., Heart Rate, Blood Pressure, Body Temperature)  
+### Physical Measurements (e.g., Weight, BMI)  
+### Activity Data (e.g., Steps, Calories Burned)  
+### Cardiovascular Monitoring (e.g., ECG, Pulse Oximetry)  
+### Respiratory Monitoring (e.g., Spirometry, Peak Flow)  
+### Behavioral and Mood Assessments  
+### Device-Specific Observations  
+
+# Data Flow and Interoperability
+## Data Collection and Transmission  
+## Data Transformation and Storage  
+## Interoperability with EHR Systems  
+## Handling Data from Multiple Sources  
+## Security and Privacy Considerations  
+
+# FHIR Profiles and Extensions
+## Profiles for RPM Observations  
+## Custom Extensions for Specialized Data  
+## Best Practices for Defining Extensions  
+## Example Profiles and Extensions  
+
+# Implementation Guidance
+## Conformance and Validation Requirements  
+## Handling Errors and Exceptions  
+## Workflow Integration Tips  
+## Best Practices for RPM Implementation  
+
+# Sample Transactions and Bundles
+## Patient Resource Example  
+## Observation Resource Example  
+## Bundled Transactions for RPM Scenarios  
+## Test Data Examples  
+
+# Terminology Bindings
+## Standardized Codes for RPM Observations  
+## Value Set Definitions  
+## Mapping Local Codes to Standard Codes  
+
+# Security and Privacy
+## Securing RPM Data Transfers  
+## Managing Patient Consent  
+## Access Control and Authentication  
+## Compliance with HIPAA, GDPR, or Other Regulations  
+
+# Testing and Validation
+## Tools for Validation (e.g., FHIR Validator)  
+## Test Scripts for RPM Observations  
+## Example Test Cases  
+
+# Appendix
+## Glossary of Terms  
+## References and Resources  
+## Change Log for the Guide  
+## FAQs  
+
+# Acknowledgments
+## Contributors  
+## Organizations and Stakeholders  
+
+# Contact Information
+## Feedback and Support  
+## IG Maintenance and Updates