ALS-6330: Fix issue merging variant metadata

hms-dbmi · Jun 17, 2024 · b1d6559 · b1d6559
1 parent ce17d75
commit b1d6559
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/.../src/main/java/edu/harvard/hms/dbmi/avillach/hpds/data/genotype/VariantMetadataIndex.java b/.../src/main/java/edu/harvard/hms/dbmi/avillach/hpds/data/genotype/VariantMetadataIndex.java
@@ -228,8 +228,11 @@ public static void merge(VariantMetadataIndex variantMetadataIndex1, VariantMeta
 				mergedFbbis.put(key, fbbis1.get(key));
 			});
 			fbbis2.keys().forEach(key -> {
-				if (!mergedFbbis.keys().contains(key)) {
+				ConcurrentHashMap<String, String[]> metadataMap = mergedFbbis.get(key);
+				if (metadataMap == null) {
 					mergedFbbis.put(key, fbbis2.get(key));
+				} else {
+					metadataMap.putAll(fbbis2.get(key));
 				}
 			});
 			mergedFbbis.complete();