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ALS-6330: Fix variant explorer functionality #115

Merged
merged 40 commits into from
Oct 10, 2024
Merged

ALS-6330: Fix variant explorer functionality #115

merged 40 commits into from
Oct 10, 2024

Commits on May 9, 2024

  1. ALS-6330: Cleanup old genomic unit tests and test data

    @ramari16
    ramari16 committed May 9, 2024
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Commits on Jun 5, 2024

  1. ALS-6330: (WIP) Integration test refactor, variant explorer fixes.

    @ramari16
    ramari16 committed Jun 5, 2024
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Commits on Jun 6, 2024

  1. ALS-6330: (WIP) Integration test refactor, variant explorer fixes.

    @ramari16
    ramari16 committed Jun 6, 2024
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Commits on Jun 7, 2024

  1. ALS-6330: Add dataset finalizer, disable test not compiling, fix some… 

    … config
    @ramari16
    ramari16 committed Jun 7, 2024
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  2. ALS-6330: Update genomic processor config for testing

    @ramari16
    ramari16 committed Jun 7, 2024
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Commits on Jun 10, 2024

  1. ALS-6330: Move VariantMetadataIndex to genomic processor. Implement m… 

    …erging of variant metadata indexes
    @ramari16
    ramari16 committed Jun 10, 2024
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  2. ALS-6330: Fix directory reference issues in variant metadata

    @ramari16
    ramari16 committed Jun 10, 2024
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  3. ALS-6330: Fix directory reference issues in variant metadata

    @ramari16
    ramari16 committed Jun 10, 2024
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Commits on Jun 11, 2024

  1. ALS-6330: Implement missing method

    @ramari16
    ramari16 committed Jun 11, 2024
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  2. ALS-6330: Implement createMaskForPatientSet for patient merging genom… 

    …ic processor
    @ramari16
    ramari16 committed Jun 11, 2024
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Commits on Jun 14, 2024

  1. ALS-6330: Fix test compile issues. Add variant list processor integra… 

    …tion test. Fix bug caused by bitmask paddings
    @ramari16
    ramari16 committed Jun 14, 2024
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Commits on Jun 17, 2024

  1. ALS-6330: Add unit tests, some minor refactoring

    @ramari16
    ramari16 committed Jun 17, 2024
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  2. ALS-6330: Fix compile issue

    @ramari16
    ramari16 committed Jun 17, 2024
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  3. ALS-6330: Fix issue merging variant metadata

    @ramari16
    ramari16 committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. ALS-6330: Fix variant metadata merging bug, refactor variant model, a… 

    …dd tests
    @ramari16
    ramari16 committed Jun 18, 2024
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Commits on Jun 26, 2024

  1. ALS-6330: Add config for bch

    @ramari16
    ramari16 committed Jun 26, 2024
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  2. ALS-6330: Fix java config typo

    @ramari16
    ramari16 committed Jun 26, 2024
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  3. ALS-6330: Fix java config typo

    @ramari16
    ramari16 committed Jun 26, 2024
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  4. ALS-6330: Fix java config typo

    @ramari16
    ramari16 committed Jun 26, 2024
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  5. ALS-6330: Remove redundant directory update

    @ramari16
    ramari16 committed Jun 26, 2024
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Commits on Jul 2, 2024

  1. ALS-6330: Remove misleading stack trace log

    @ramari16
    ramari16 committed Jul 2, 2024
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Commits on Aug 12, 2024

  1. ALS-6330: Update integration tests to test no-call data

    @ramari16
    ramari16 committed Aug 12, 2024
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  2. ALS-6330: Remove integration test directory

    @ramari16
    ramari16 committed Aug 12, 2024
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Commits on Oct 3, 2024

  1. Merge branch 'genomic-v2' into ALS-6330

    @ramari16
    ramari16 committed Oct 3, 2024
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  2. Clean test environment

    @ramari16
    ramari16 committed Oct 3, 2024
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Commits on Oct 8, 2024

  1. Logging to fix tests

    @ramari16
    ramari16 committed Oct 8, 2024
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  2. Logging to fix tests

    @ramari16
    ramari16 committed Oct 8, 2024
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  3. Logging to fix tests

    @ramari16
    ramari16 committed Oct 8, 2024
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  4. Logging to fix tests

    @ramari16
    ramari16 committed Oct 8, 2024
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  5. Fix encryption key issue

    @ramari16
    ramari16 committed Oct 8, 2024
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  6. Fix encryption key issue

    @ramari16
    ramari16 committed Oct 8, 2024
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  7. Cleanup

    @ramari16
    ramari16 committed Oct 8, 2024
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Commits on Oct 9, 2024

  1. Cleanup

    @ramari16
    ramari16 committed Oct 9, 2024
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  2. Clarify confusing code

    @ramari16
    ramari16 committed Oct 9, 2024
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  3. Cleanup

    @ramari16
    ramari16 committed Oct 9, 2024
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  4. Cleanup

    @ramari16
    ramari16 committed Oct 9, 2024
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  5. Cleanup

    @ramari16
    ramari16 committed Oct 9, 2024
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  6. Remove lombok. Add record

    @Luke-Sikina
    Luke Sikina authored and Luke-Sikina committed Oct 9, 2024
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Commits on Oct 10, 2024

  1. Changes from PR

    @ramari16
    ramari16 committed Oct 10, 2024
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  2. Fix test

    @ramari16
    ramari16 committed Oct 10, 2024
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